openneuro-mriqc24.0.2/ds000220
Watch
2
0
Fork
You've already forked ds000220
 0
Code Activity
No description
70 commits 28 branches 0 tags 1.5 GiB
  • HTML 99.8%
  • Shell 0.2%
Find a file
Exact
Repository files (latest commit first)
Filename Latest commit message Latest commit date
Felix Hoffstaedter 10f200fe16 [DATALAD RUNCMD] run MRIQC classifier 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--0.15.1.sing mriqc_clf --load-classifier -X group_T1w.tsv;   mv mclf_run*data-unseen_pred.csv mclf_data-unseen_pred.csv",
 "dsid": "c2abf10a-b73f-4c4e-a1d6-0b0b45440e2b",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--0.15.1.sing"
 ],
 "inputs": [
  "group_T1w.tsv"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2026-06-01 18:02:31 +02:00
.datalad [DATALAD RUNCMD] Remove datalad-get option and do singularity exec instead of run 2026-03-31 16:09:48 +02:00
code SLURM submission setup 2026-03-31 16:09:59 +02:00
duct-logs Merge results 2026-06-01 17:58:43 +02:00
sourcedata Register ds000220 BIDS dataset as input 2026-03-31 16:09:54 +02:00
sub-control01 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control02 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control03 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control04 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control05 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control06 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control07 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control08 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control09 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control10 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control11 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control12 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi01 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi02 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi03 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi04 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi05 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi06 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi07 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi08 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi09 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi10 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi11 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi12 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi13 move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi14 move data to dataset root 2026-06-01 17:59:00 +02:00
.bidsignore move data to dataset root 2026-06-01 17:59:00 +02:00
.gitattributes keep non-binary files in git 2026-03-31 16:09:36 +02:00
.gitignore SLURM submission setup 2026-03-31 16:09:59 +02:00
.gitmodules Register ds000220 BIDS dataset as input 2026-03-31 16:09:54 +02:00
CHANGELOG.md Apply YODA dataset setup 2026-03-31 16:09:35 +02:00
dataset_description.json move data to dataset root 2026-06-01 17:59:00 +02:00
group_bold.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-01 18:02:14 +02:00
group_bold.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-01 18:02:14 +02:00
group_T1w.html [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-01 18:02:14 +02:00
group_T1w.tsv [DATALAD RUNCMD] Compute MRIQC group stats 2026-06-01 18:02:14 +02:00
mclf_data-unseen_pred.csv [DATALAD RUNCMD] run MRIQC classifier 2026-06-01 18:02:31 +02:00
README.md add README with Acknowledgements 2026-03-31 16:09:36 +02:00
sub-control01_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control01_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control01_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control01_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control02_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control02_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control02_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control02_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control03_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control03_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control03_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control03_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control04_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control04_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control04_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control04_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control05_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control05_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control05_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control05_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control06_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control06_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control06_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control06_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control07_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control07_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control07_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control07_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control08_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control08_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control08_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control08_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control09_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control09_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control09_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control09_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control10_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control10_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control10_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control10_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control11_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control11_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control11_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control11_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control12_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control12_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control12_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-control12_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi01_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi01_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi01_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi01_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi01_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi01_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi02_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi02_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi02_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi02_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi02_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi02_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi03_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi03_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi03_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi03_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi03_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi03_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi04_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi04_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi04_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi04_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi04_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi04_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi05_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi05_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi05_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi05_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi05_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi05_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi06_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi06_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi06_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi06_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi06_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi06_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi07_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi07_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi07_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi07_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi07_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi07_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi08_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi08_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi08_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi08_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi08_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi08_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi09_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi09_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi09_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi09_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi09_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi09_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi10_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi10_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi10_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi10_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi10_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi10_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi11_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi11_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi11_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi11_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi11_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi11_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi12_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi12_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi12_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi12_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi12_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi12_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi13_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi13_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi13_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi13_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi13_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi13_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi14_ses-1_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi14_ses-1_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi14_ses-2_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi14_ses-2_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi14_ses-3_T1w.html move data to dataset root 2026-06-01 17:59:00 +02:00
sub-tbi14_ses-3_task-rest_bold.html move data to dataset root 2026-06-01 17:59:00 +02:00

README.md

ds000220 - MRIQC derivatives

This dataset is a BIDS Derivatives dataset resulting from running MRIQC 24.0.2 on ds000220.

Methods

MRIQC documentation can be found on https://mriqc.readthedocs.io/.

This dataset was created using BOOTSTRAP - a high-throughput container workflow for MRIQC implementing the FAIRly Big Workflow using Datalad and Singularity containers for full reproducibility and provenance capture including resource consumption via con-duct.

Acknowledgements

The authors from the Institute of Neuroscience and Medicine (INM-7) at the Forschungszentrum Jülich, Germany gratefully acknowledge the FENIX Research Infrastructure for funding this project by providing cloud computing time on the FZJ Supercomputer JUSUF at Jülich Supercomputing Centre (JSC).