43 lines
903 B
Python
43 lines
903 B
Python
"""
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UKB VBM GMD Extraction
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======================
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Authors: Federico Raimondo
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License: BSD 3 clause
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"""
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from junifer.api import run
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markers = [
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{
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"name": "Schaefer1000x7_TrimMean80",
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"kind": "ParcelAggregation",
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"parcellation": "Schaefer1000x7",
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"method": "trim_mean",
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"method_params": {"proportiontocut": 0.2},
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},
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{
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"name": "Schaefer1000x7_Mean",
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"kind": "ParcelAggregation",
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"parcellation": "Schaefer1000x7",
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"method": "mean",
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},
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{
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"name": "Schaefer1000x7_Std",
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"kind": "ParcelAggregation",
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"parcellation": "Schaefer1000x7",
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"method": "std",
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},
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]
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run(
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workdir="/tmp",
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datagrabber="JuselessUKBVBM",
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elements=("sub-1627474", "ses-2"),
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markers=markers,
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storage="SQLDataFrameStorage",
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storage_params={"outpath": "/data/project/juniferexample"},
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)
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