52 lines
1.7 KiB
Python
52 lines
1.7 KiB
Python
# Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
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# License: AGPL
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from pathlib import Path
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from tempfile import TemporaryDirectory
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import datalad.api as dl
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dst = "git@gin.g-node.org:/juaml/datalad-example-bids-ses.git"
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with TemporaryDirectory() as tmpdir_name:
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tmpdir = Path(tmpdir_name)
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ds = dl.create(tmpdir) # type: ignore
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base_dir = tmpdir / "example_bids_ses"
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base_dir.mkdir()
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for i_sub in range(1, 10):
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t_sub = f"sub-{i_sub:02d}"
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sub_dir = base_dir / t_sub
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sub_dir.mkdir()
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for i_ses in range(1, 4):
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t_ses = f"ses-{i_ses:02d}"
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ses_dir = sub_dir / t_ses
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ses_dir.mkdir()
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for dname in ["anat", "func"]:
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(ses_dir / dname).mkdir()
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fnames = [
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f"anat/{t_sub}_{t_ses}_T1w.nii.gz",
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f"anat/{t_sub}_{t_ses}_brain_mask.nii.gz",
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f"anat/{t_sub}_{t_ses}_from-MNI152NLin2009cAsym_to-T1w_xfm.h5",
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f"anat/{t_sub}_{t_ses}_from-T1w_to-MNI152NLin2009cAsym_xfm.h5",
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]
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if i_ses != 3: # Session 3 does not have functional data
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fnames.extend(
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[
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f"func/{t_sub}_{t_ses}_task-rest_bold.nii.gz",
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f"func/{t_sub}_{t_ses}_task-rest_bold.json",
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f"func/{t_sub}_{t_ses}_task-rest_brain_mask.nii.gz",
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f"func/{t_sub}_{t_ses}_task-rest_confounds_regressors.tsv",
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]
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)
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for fname in fnames:
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with open(ses_dir / fname, "w") as f:
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f.write("placeholder-{fname}")
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ds.save(recursive=True)
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ds.siblings("add", name="gin", url=dst)
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ds.push(to="gin", force="all")
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