diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ba9e2a7de..da6e721c5 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -46,8 +46,8 @@ jobs: jq - name: Copy junifer-data directory run: | - mkdir -p $HOME/junifer_data/v1 - cp -ar /root/junifer_data/v1/. $HOME/junifer_data/v1/ + mkdir -p $HOME/junifer_data/v2 + cp -ar /root/junifer_data/v2/. $HOME/junifer_data/v2/ - name: Checkout repository uses: actions/checkout@v4 with: diff --git a/.github/workflows/docs-preview.yml b/.github/workflows/docs-preview.yml index b077ee3be..065b4c7d7 100644 --- a/.github/workflows/docs-preview.yml +++ b/.github/workflows/docs-preview.yml @@ -39,8 +39,8 @@ jobs: jq - name: Copy junifer-data directory run: | - mkdir -p $HOME/junifer_data/v1 - cp -ar /root/junifer_data/v1/. $HOME/junifer_data/v1/ + mkdir -p $HOME/junifer_data/v2 + cp -ar /root/junifer_data/v2/. $HOME/junifer_data/v2/ - name: Checkout repository uses: actions/checkout@v4 with: diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 3a721e5dc..741a7d0f1 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -31,8 +31,8 @@ jobs: jq - name: Copy junifer-data directory run: | - mkdir -p $HOME/junifer_data/v1 - cp -ar /root/junifer_data/v1/. $HOME/junifer_data/v1/ + mkdir -p $HOME/junifer_data/v2 + cp -ar /root/junifer_data/v2/. $HOME/junifer_data/v2/ - name: Checkout repository uses: actions/checkout@v4 with: diff --git a/docs/builtin.rst b/docs/builtin.rst index 6a4892607..2c31cabef 100644 --- a/docs/builtin.rst +++ b/docs/builtin.rst @@ -640,6 +640,15 @@ Available | Meta-analysis. | Journal of Cognitive Neuroscience, Volume 21(3), Pages 489–510 (2009). | https://doi.org/10.1162/jocn.2008.21029 + * - | Functionally-constrained ROIs from non-cortical structures from + | Seitzman et al. (2020) + - ``Seitzman2018`` + - 0.0.6 + - | Seitzman, B. A., Gratton, C., Marek, S. et al. + | A set of functionally-defined brain regions with improved representation + | of the subcortex and cerebellum. + | NeuroImage, Volume 206 (2020). + | https://doi.org/10.1016/j.neuroimage.2019.116290 Planned diff --git a/docs/changes/newsfragments/437.misc b/docs/changes/newsfragments/437.misc new file mode 100644 index 000000000..23dc79f96 --- /dev/null +++ b/docs/changes/newsfragments/437.misc @@ -0,0 +1 @@ +Bump ``junifer-data`` to ``v2`` for CI workflows, remove ``Power`` and add ``Seitzman2018`` to :class:`.CoordinatesRegistry` by `Synchon Mandal`_ diff --git a/junifer/data/coordinates/_coordinates.py b/junifer/data/coordinates/_coordinates.py index b2e86fffc..66193be2a 100644 --- a/junifer/data/coordinates/_coordinates.py +++ b/junifer/data/coordinates/_coordinates.py @@ -106,10 +106,6 @@ class CoordinatesRegistry(BasePipelineDataRegistry, metaclass=Singleton): "file_path_suffix": "WM/WM_VOIs.txt", "space": "MNI", }, - "Power": { - "file_path_suffix": "Power/Power2011_MNI_VOIs.txt", - "space": "MNI", - }, "Power2011": { "file_path_suffix": "Power/Power2011_MNI_VOIs.txt", "space": "MNI", @@ -124,6 +120,10 @@ class CoordinatesRegistry(BasePipelineDataRegistry, metaclass=Singleton): ), "space": "MNI", }, + "Seitzman2018": { + "file_path_suffix": "Seitzman/Seitzman2018_MNI_VOIs.txt", + "space": "MNI", + }, } ) diff --git a/junifer/data/utils.py b/junifer/data/utils.py index 1b64e04b0..836f96599 100644 --- a/junifer/data/utils.py +++ b/junifer/data/utils.py @@ -24,10 +24,10 @@ __all__ = [ # junifer-data version constant -JUNIFER_DATA_VERSION = "1" +JUNIFER_DATA_VERSION = "2" # junifer-data hexsha constant -JUNIFER_DATA_HEXSHA = "e9aecf7b5a2fff82de00d265e02afde42a448647" +JUNIFER_DATA_HEXSHA = "015712689254c052fa64bca19f0f2da342e664ac" JUNIFER_DATA_PARAMS = { "tag": JUNIFER_DATA_VERSION,