.github/workflows/ci.yml

@@ -16,13 +16,14 @@ on:
 
 jobs:
   run-tests:
+    # https://github.com/actions/setup-python/issues/1013#issuecomment-2642078401
     runs-on: ubuntu-22.04
-    # Use custom docs CI image
+    # Use custom CI image
     container: ghcr.io/juaml/junifer-ci:main
     strategy:
       fail-fast: false
       matrix:
-        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
+        python-version: ['3.9', '3.10', '3.11', '3.12']
 
     steps:
     - name: Check ANTs
@@ -43,10 +44,10 @@ jobs:
         git-annex \
         make \
         jq
-    - name: Copy xfms directory
+    - name: Copy junifer-data directory
       run: |
-        mkdir -p $HOME/junifer/data/xfms
+        mkdir -p $HOME/junifer_data/v1
-        cp -ar /root/junifer/data/xfms/. $HOME/junifer/data/xfms/
+        cp -ar /root/junifer_data/v1/. $HOME/junifer_data/v1/
     - name: Checkout repository
       uses: actions/checkout@v4
       with:

.github/workflows/docs-preview.yml

@@ -17,6 +17,7 @@ concurrency: preview-${{ github.ref }}
 
 jobs:
   build-docs:
+    # https://github.com/actions/setup-python/issues/1013#issuecomment-2642078401
     runs-on: ubuntu-22.04
     # Use custom docs CI image
     container: ghcr.io/juaml/junifer-docs:main
@@ -25,18 +26,19 @@ jobs:
       run: |
         echo "Using ANTs : $(antsRegistration --version)"
     - name: Install system dependencies
-      run: |
       # actions/checkout fails to identify Git as it's not in the CI image
-        apt-get -qq update && \
+      run: |
+        apt-get -qq update
         apt-get -qq install -y \
         git \
         git-annex \
         make \
         jq
-        # Copy xfms directory
+    - name: Copy junifer-data directory
-        mkdir -p $HOME/junifer/data/xfms && \
+      run: |
-        cp -ar /root/junifer/data/xfms/. $HOME/junifer/data/xfms/
+        mkdir -p $HOME/junifer_data/v1
-    - name: Checkout source
+        cp -ar /root/junifer_data/v1/. $HOME/junifer_data/v1/
+    - name: Checkout repository
       uses: actions/checkout@v4
       with:
         fetch-depth: 0
@@ -44,7 +46,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: "3.x"
+        python-version: "3.12"
     - name: Install Python dependencies
       run: |
         python -m pip install --upgrade pip setuptools wheel

.github/workflows/docs.yml

@@ -12,6 +12,7 @@ on:
 
 jobs:
   build-docs:
+    # https://github.com/actions/setup-python/issues/1013#issuecomment-2642078401
     runs-on: ubuntu-22.04
     # Use custom docs CI image
     container: ghcr.io/juaml/junifer-docs:main
@@ -28,10 +29,10 @@ jobs:
         git-annex \
         make \
         jq
-    - name: Copy xfms directory
+    - name: Copy junifer-data directory
       run: |
-        mkdir -p $HOME/junifer/data/xfms
+        mkdir -p $HOME/junifer_data/v1
-        cp -ar /root/junifer/data/xfms/. $HOME/junifer/data/xfms/
+        cp -ar /root/junifer_data/v1/. $HOME/junifer_data/v1/
     - name: Checkout repository
       uses: actions/checkout@v4
       with:
@@ -41,7 +42,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: "3.x"
+        python-version: "3.12"
     - name: Install Python dependencies
       run: |
         python -m pip install --upgrade pip setuptools wheel

docs/changes/newsfragments/428.misc

@@ -0,0 +1 @@
+Improve GitHub Actions workflows by `Synchon Mandal`_