From 1c702645c03eda6cfd8b38fdd715041904213d57 Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Mon, 29 Jul 2024 08:35:46 +0200 Subject: [PATCH 1/2] fix: correct command prep for mri_binarize in BrainPrint --- junifer/markers/brainprint.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/junifer/markers/brainprint.py b/junifer/markers/brainprint.py index d5deb7bd4..13c36a1e3 100644 --- a/junifer/markers/brainprint.py +++ b/junifer/markers/brainprint.py @@ -143,7 +143,7 @@ class BrainPrint(BaseMarker): mri_binarize_cmd = [ "mri_binarize", f"--i {aseg_path.resolve()}", - f"--match {''.join(indices)}", + f"--match {' '.join(indices)}", f"--o {mri_binarize_output_path.resolve()}", ] # Call mri_binarize command -- 2.52.0 From f16910093adba09fc641f718d94e8c5ed5d20d74 Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Mon, 29 Jul 2024 09:56:38 +0200 Subject: [PATCH 2/2] chore: add changelog 356.bugfix --- docs/changes/newsfragments/356.bugfix | 1 + 1 file changed, 1 insertion(+) create mode 100644 docs/changes/newsfragments/356.bugfix diff --git a/docs/changes/newsfragments/356.bugfix b/docs/changes/newsfragments/356.bugfix new file mode 100644 index 000000000..2c5c196a8 --- /dev/null +++ b/docs/changes/newsfragments/356.bugfix @@ -0,0 +1 @@ +Fix ``mri_binarize`` command preparation for structures with multiple indices in :class:`.BrainPrint` by `Fede Raimondo`_ -- 2.52.0