From f33c26f1539d9efca6fa4329197493241e31466f Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Thu, 22 Feb 2024 14:41:27 +0100 Subject: [PATCH 1/3] feature: add support for Autobiographical Memory coordinates --- .../VOIs/meta/AutobiographicalMemory_VOIs.txt | 23 +++++++++++++++++++ junifer/data/coordinates.py | 4 ++++ 2 files changed, 27 insertions(+) create mode 100644 junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt diff --git a/junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt b/junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt new file mode 100644 index 000000000..efa86cbf3 --- /dev/null +++ b/junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt @@ -0,0 +1,23 @@ +-2 -53 18 PCu-PCC_LR +-25 -26 -14 HC-PHC-AMG_L +-47 -61 26 TPJ_L +-3 47 -1 Medial-prefrontal-cortex_rACC(bilateral)_L +-56 -8 -14 STS_MTG_inferior-temporal-sulcus_L +-47 25 -5 Ventrolateral-prefrontal-cortex_temporal-pole_L +23 -31 -12 HC-PHC_R +-3 12 57 Middle-frontal-gyrus_LR +49 -59 27 TPJ_R +-45 3 45 Posterior-lateral-prefrontal-cortex_L +-40 47 14 Frontal-pole(lateral)_L +23 -13 -15 HC-PHC_R +49 -5 -13 Temporal-pole_STS_MTG_R +-37 14 -32 Temporal-pole_L +-37 -81 30 Occ_L +-46 24 21 Dorsolateral-prefrontal-cortex_L +50 27 -5 Ventrolateral-prefrontal-cortex_R +-11 55 17 Frontal_pole(medial)_L +3 -9 5 Thalamus_R +-5 33 22 rACC_L +-6 -37 33 PCC_L +-28 9 51 Superior-frontal-sulcus_L +28 1 -19 AMG_R diff --git a/junifer/data/coordinates.py b/junifer/data/coordinates.py index 7d9f17a37..0f7cacaba 100644 --- a/junifer/data/coordinates.py +++ b/junifer/data/coordinates.py @@ -110,6 +110,10 @@ _available_coordinates: Dict[ "path": _vois_meta_path / "Power2013_MNI_VOIs.tsv", "space": "MNI", }, + "AutobiographicalMemory": { + "path": _vois_meta_path / "AutobiographicalMemory_VOIs.txt", + "space": "MNI", + }, } -- 2.52.0 From da7ab4cdcc78f2d5e9eabd6cbe2635a6cbcc2d76 Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Thu, 22 Feb 2024 14:41:54 +0100 Subject: [PATCH 2/3] docs: update builtin.rst with AutobiographicalMemory coordinates --- docs/builtin.rst | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/docs/builtin.rst b/docs/builtin.rst index f2bfd6028..2388c997c 100644 --- a/docs/builtin.rst +++ b/docs/builtin.rst @@ -585,6 +585,15 @@ Available | Evidence for hubs in human functional brain networks. | Neuron, Volume 79(4), Pages 798–813 (2013). | https://doi.org/10.1016/j.neuron.2013.07.035 + * - Autobiographical Memory from Spreng et al. (2009) + - ``AutobiographicalMemory`` + - 0.0.4 + - | Spreng, R. N., Mar, R. A., Kim, A. S. N. + | The Common Neural Basis of Autobiographical Memory, Prospection, + | Navigation, Theory of Mind, and the Default Mode: A Quantitative + | Meta-analysis. + | Journal of Cognitive Neuroscience, Volume 21(3), Pages 489–510 (2009). + | https://doi.org/10.1162/jocn.2008.21029 Planned -- 2.52.0 From e9bc59b970e7aa610fbba87b7df2af3c5a950897 Mon Sep 17 00:00:00 2001 From: Synchon Mandal Date: Thu, 22 Feb 2024 14:44:58 +0100 Subject: [PATCH 3/3] chore: add changelog 250.feature --- docs/changes/newsfragments/250.feature | 1 + 1 file changed, 1 insertion(+) create mode 100644 docs/changes/newsfragments/250.feature diff --git a/docs/changes/newsfragments/250.feature b/docs/changes/newsfragments/250.feature new file mode 100644 index 000000000..b24159465 --- /dev/null +++ b/docs/changes/newsfragments/250.feature @@ -0,0 +1 @@ +Add support for ``AutobiographicalMemory`` coordinates by `Synchon Mandal`_ -- 2.52.0