diff --git a/docs/changes/newsfragments/107.enh b/docs/changes/newsfragments/107.enh deleted file mode 100644 index 363c6885b..000000000 --- a/docs/changes/newsfragments/107.enh +++ /dev/null @@ -1 +0,0 @@ -Organize functional connectivity markers in ``junifer.markers.functional_connectivity`` by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/127.bugfix b/docs/changes/newsfragments/127.bugfix deleted file mode 100644 index 2391242de..000000000 --- a/docs/changes/newsfragments/127.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix a bug in which relative storage URIs will be computed relative to the CWD and not to the location of the YAML file by `Fede Raimondo`_. \ No newline at end of file diff --git a/docs/changes/newsfragments/146.feature b/docs/changes/newsfragments/146.feature deleted file mode 100644 index 5f48fac7b..000000000 --- a/docs/changes/newsfragments/146.feature +++ /dev/null @@ -1 +0,0 @@ -Expose a :func:`.merge_parcellations` function to merge a list of parcellations by `Leonard Sasse`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/147.feature b/docs/changes/newsfragments/147.feature deleted file mode 100644 index 562701c7a..000000000 --- a/docs/changes/newsfragments/147.feature +++ /dev/null @@ -1 +0,0 @@ -Add support for HDF5 feature storage via :class:`.HDF5FeatureStorage` by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/155.enh b/docs/changes/newsfragments/155.enh deleted file mode 100644 index 99572b39d..000000000 --- a/docs/changes/newsfragments/155.enh +++ /dev/null @@ -1 +0,0 @@ -Change HCP datagrabber tests to decrease CI running time by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/158.change b/docs/changes/newsfragments/158.change deleted file mode 100644 index de74f17af..000000000 --- a/docs/changes/newsfragments/158.change +++ /dev/null @@ -1 +0,0 @@ -Add ``confounds_format`` parameter to :class:`.PatternDataGrabber` constructor for improved handling of confounds specified via ``BOLD_confounds`` data type by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/159.bugfix b/docs/changes/newsfragments/159.bugfix deleted file mode 100644 index 49a22937d..000000000 --- a/docs/changes/newsfragments/159.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix ``junifer run`` to respect preprocess step specified in the pipeline by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/160.enh b/docs/changes/newsfragments/160.enh deleted file mode 100644 index 270e188fd..000000000 --- a/docs/changes/newsfragments/160.enh +++ /dev/null @@ -1 +0,0 @@ -Allow :class:`.PartlyCloudyTestingDataGrabber` to be accessible via ``import junifer.testing.registry`` by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/163.feature b/docs/changes/newsfragments/163.feature deleted file mode 100644 index 73385163b..000000000 --- a/docs/changes/newsfragments/163.feature +++ /dev/null @@ -1 +0,0 @@ -Add :class:`.TemporalSNRParcels` and :class:`.TemporalSNRSpheres` by `Leonard Sasse`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/165.enh b/docs/changes/newsfragments/165.enh deleted file mode 100644 index 65b572913..000000000 --- a/docs/changes/newsfragments/165.enh +++ /dev/null @@ -1 +0,0 @@ -Update docstrings and fix typo in log message by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/166.doc b/docs/changes/newsfragments/166.doc deleted file mode 100644 index 0b90ed28e..000000000 --- a/docs/changes/newsfragments/166.doc +++ /dev/null @@ -1 +0,0 @@ -Add more documentation on registering parcellations, coordinates, and masks by `Leonard Sasse`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/167.feature b/docs/changes/newsfragments/167.feature deleted file mode 100644 index c4cd95c1b..000000000 --- a/docs/changes/newsfragments/167.feature +++ /dev/null @@ -1 +0,0 @@ -Add support for ``Power`` coordinates by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/168.feature b/docs/changes/newsfragments/168.feature deleted file mode 100644 index 45f259326..000000000 --- a/docs/changes/newsfragments/168.feature +++ /dev/null @@ -1 +0,0 @@ -Add support for ``Dosenbach`` coordinates by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/175.feature b/docs/changes/newsfragments/175.feature deleted file mode 100644 index 5043614a3..000000000 --- a/docs/changes/newsfragments/175.feature +++ /dev/null @@ -1 +0,0 @@ -Add support for nilearn computed masks (``compute_epi_mask``, ``compute_brain_mask``, ``compute_background_mask``, ``fetch_icbm152_brain_gm_mask``) by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/177.enh b/docs/changes/newsfragments/177.enh deleted file mode 100644 index 3e491832c..000000000 --- a/docs/changes/newsfragments/177.enh +++ /dev/null @@ -1 +0,0 @@ -Add fMRIPrep brain masks to the datagrabber patterns for all datagrabbers in the aomic sub-package by `Leonard Sasse`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/181.change b/docs/changes/newsfragments/181.change deleted file mode 100644 index 2af2412ad..000000000 --- a/docs/changes/newsfragments/181.change +++ /dev/null @@ -1 +0,0 @@ -Rename ``store_table()`` to ``store_vector()`` for storage-like objects and adapt marker-like objects to use ``"vector"`` in place of ``"table"`` for storage. Also, improve the logic of storing vectors by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/183.bugfix b/docs/changes/newsfragments/183.bugfix deleted file mode 100644 index a2a0c7bb6..000000000 --- a/docs/changes/newsfragments/183.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix a bug in which only ``REST1`` and ``REST2`` tasks could be accesed in :class:`.DataladHCP1200` and :class:`.HCP1200` datagrabbers by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/183.change b/docs/changes/newsfragments/183.change deleted file mode 100644 index 374b56acd..000000000 --- a/docs/changes/newsfragments/183.change +++ /dev/null @@ -1 +0,0 @@ -Add ``ica_fix`` parameter to :class:`.DataladHCP1200` and :class:`.HCP1200` datagrabbers to allow for selecting data processed with ICA+FIX. Default value is ``False`` which changes behaviour since 0.0.1 release. By `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/185.bugfix b/docs/changes/newsfragments/185.bugfix deleted file mode 100644 index 84f7ddd90..000000000 --- a/docs/changes/newsfragments/185.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix a bug in which fitting a marker (e.g. ``SphereAggregation``) on a specific type (e.g.: ``BOLD``) will fail if another non-supported type (e.g.: ``BOLD_confounds``) is present in the data object by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/185.enh b/docs/changes/newsfragments/185.enh deleted file mode 100644 index 7ad34b6ab..000000000 --- a/docs/changes/newsfragments/185.enh +++ /dev/null @@ -1 +0,0 @@ -Improved logging output for preprocessing, collecting and pipeline building from YAML by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/187.bugfix b/docs/changes/newsfragments/187.bugfix deleted file mode 100644 index 2cd330024..000000000 --- a/docs/changes/newsfragments/187.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix :class:`.ALFFParcels`, :class:`.ALFFSpheres`, :class:`.ReHoSpheres` and :class:`.ReHoParcels` pass the ``extra_input`` parameter by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/188.change b/docs/changes/newsfragments/188.change deleted file mode 100644 index fff273933..000000000 --- a/docs/changes/newsfragments/188.change +++ /dev/null @@ -1 +0,0 @@ -Add ``pre_run`` parameter to ``_queue_condor`` by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/189.bugfix b/docs/changes/newsfragments/189.bugfix deleted file mode 100644 index bd5836a8d..000000000 --- a/docs/changes/newsfragments/189.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix several markers that did not properly handle the ``extra_input`` parameter by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/190.change b/docs/changes/newsfragments/190.change deleted file mode 100644 index 7c844e40d..000000000 --- a/docs/changes/newsfragments/190.change +++ /dev/null @@ -1 +0,0 @@ -Expose ``allow_overlap`` parameter in :class:`.SphereAggregation` and related markers by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/190.enh b/docs/changes/newsfragments/190.enh deleted file mode 100644 index 24ebc90db..000000000 --- a/docs/changes/newsfragments/190.enh +++ /dev/null @@ -1 +0,0 @@ -Allow for empty spheres in :class:`.JuniferNiftiSpheresMasker`, that will result in NaNs. Also, modify the behaviour of the ``collect`` parameter in HTCondor ``queue`` function to run a collect job even if some of the previous jobs fail. This is useful to collect the results of a pipeline even if some of the jobs fail by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/190.feature b/docs/changes/newsfragments/190.feature deleted file mode 100644 index 0e2fc4aae..000000000 --- a/docs/changes/newsfragments/190.feature +++ /dev/null @@ -1 +0,0 @@ -Add aggregation function :func:`.count` that returns the number of elements in a given axis. This allows to count the number of voxels per sphere/parcel when used as ``method`` in markers by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/191.bugfix b/docs/changes/newsfragments/191.bugfix deleted file mode 100644 index d2c3dede9..000000000 --- a/docs/changes/newsfragments/191.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix a bug in which relative paths in the YAML ``with`` directive would be computed relative to the current working directory of the process instead of the location of the YAML file by `Fede Raimondo`_. \ No newline at end of file diff --git a/docs/changes/newsfragments/192.bugfix b/docs/changes/newsfragments/192.bugfix deleted file mode 100644 index 743daf708..000000000 --- a/docs/changes/newsfragments/192.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix an issue with datalad cache and locks in which the user-specific configuration might create a conflict in high throughput systems by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/194.bugfix b/docs/changes/newsfragments/194.bugfix deleted file mode 100644 index 922eb87e5..000000000 --- a/docs/changes/newsfragments/194.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix a bug in which :class:`.ParcelAggregation` could yield duplicated column names if two or more parcels were used and label names were not unique by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/194.enh b/docs/changes/newsfragments/194.enh deleted file mode 100644 index c821fc734..000000000 --- a/docs/changes/newsfragments/194.enh +++ /dev/null @@ -1 +0,0 @@ -Allow for empty parcels in :class:`.ParcelAggregation`, that will result in NaNs by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/195.bugfix b/docs/changes/newsfragments/195.bugfix deleted file mode 100644 index 8a89cc9da..000000000 --- a/docs/changes/newsfragments/195.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix a bug in which :func:`.count` will not be correctly applied across an axis by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/196.enh b/docs/changes/newsfragments/196.enh deleted file mode 100644 index afbe29424..000000000 --- a/docs/changes/newsfragments/196.enh +++ /dev/null @@ -1 +0,0 @@ -Improve metadata and data I/O for :class:`.HDF5FeatureStorage` by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/199.bugfix b/docs/changes/newsfragments/199.bugfix deleted file mode 100644 index c3b207315..000000000 --- a/docs/changes/newsfragments/199.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix an issue with datalad cache and locks in which the overriden settings in Junifer were not propagated to subprocesses, resulting in using the default settings by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/200.bugfix b/docs/changes/newsfragments/200.bugfix deleted file mode 100644 index 1785e3870..000000000 --- a/docs/changes/newsfragments/200.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix a bug in which :func:`.get_mask` fails for FunctionalConnectivityBase class, because of missing extra_input parameter by `Leonard Sasse`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/201.enh b/docs/changes/newsfragments/201.enh deleted file mode 100644 index 46c2ff64c..000000000 --- a/docs/changes/newsfragments/201.enh +++ /dev/null @@ -1 +0,0 @@ -Force datalad to be non-interactive on *queued* jobs by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/203.doc b/docs/changes/newsfragments/203.doc deleted file mode 100644 index 7aea47778..000000000 --- a/docs/changes/newsfragments/203.doc +++ /dev/null @@ -1 +0,0 @@ -Migrate and document changelog creation and maintenance via ``towncrier`` by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/205.doc b/docs/changes/newsfragments/205.doc deleted file mode 100644 index 1ef12cf48..000000000 --- a/docs/changes/newsfragments/205.doc +++ /dev/null @@ -1 +0,0 @@ -Add copy button to documentation code blocks by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/210.doc b/docs/changes/newsfragments/210.doc deleted file mode 100644 index 007bc35f5..000000000 --- a/docs/changes/newsfragments/210.doc +++ /dev/null @@ -1 +0,0 @@ -Add sections *starting* and *help* in the documentation by `Fede Raimondo`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/214.enh b/docs/changes/newsfragments/214.enh deleted file mode 100644 index 72f0c43e7..000000000 --- a/docs/changes/newsfragments/214.enh +++ /dev/null @@ -1 +0,0 @@ -Add missing ``abstractmethod`` decorators for ``get_valid_inputs`` methods of :class:`.BaseMarker` and :class:`.BasePreprocessor` by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/215.bugfix b/docs/changes/newsfragments/215.bugfix deleted file mode 100644 index 2e3885b3f..000000000 --- a/docs/changes/newsfragments/215.bugfix +++ /dev/null @@ -1 +0,0 @@ -Fix the output of :class:`.RSSETSMarker` to be 2D by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/216.change b/docs/changes/newsfragments/216.change deleted file mode 100644 index bbd1008f2..000000000 --- a/docs/changes/newsfragments/216.change +++ /dev/null @@ -1 +0,0 @@ -Rename ``AmplitudeLowFrequencyFluctuationParcels`` and ``AmplitudeLowFrequencyFluctuationSpheres`` to :class:`.ALFFParcels` and :class:`.ALFFSpheres` by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/218.doc b/docs/changes/newsfragments/218.doc deleted file mode 100644 index 62f6da514..000000000 --- a/docs/changes/newsfragments/218.doc +++ /dev/null @@ -1 +0,0 @@ -Shorten Sphinx references across code and docs, and add ``black`` shield in README by `Synchon Mandal`_ \ No newline at end of file diff --git a/docs/changes/newsfragments/64.feature b/docs/changes/newsfragments/64.feature deleted file mode 100644 index 69976419e..000000000 --- a/docs/changes/newsfragments/64.feature +++ /dev/null @@ -1 +0,0 @@ -Add :class:`.EdgeCentricFCParcels` and :class:`.EdgeCentricFCSpheres` by `Leonard Sasse`_ \ No newline at end of file diff --git a/docs/whats_new.rst b/docs/whats_new.rst index 0d1e8c262..90f575319 100644 --- a/docs/whats_new.rst +++ b/docs/whats_new.rst @@ -8,6 +8,138 @@ What's new .. towncrier release notes start +Junifer 0.0.2 (2023-03-31) +-------------------------- + +Bugfixes +^^^^^^^^ + +- Fix a bug in which relative storage URIs will be computed relative to the CWD + and not to the location of the YAML file by `Fede Raimondo`_. (:gh:`127`) +- Fix ``junifer run`` to respect preprocess step specified in the pipeline by + `Synchon Mandal`_ (:gh:`159`) +- Fix a bug in which only ``REST1`` and ``REST2`` tasks could be accesed in + :class:`.DataladHCP1200` and :class:`.HCP1200` datagrabbers by `Fede + Raimondo`_ (:gh:`183`) +- Fix a bug in which fitting a marker (e.g. ``SphereAggregation``) on a + specific type (e.g.: ``BOLD``) will fail if another non-supported type (e.g.: + ``BOLD_confounds``) is present in the data object by `Fede Raimondo`_ + (:gh:`185`) +- Fix :class:`.ALFFParcels`, :class:`.ALFFSpheres`, :class:`.ReHoSpheres` and + :class:`.ReHoParcels` pass the ``extra_input`` parameter by `Fede Raimondo`_ + (:gh:`187`) +- Fix several markers that did not properly handle the ``extra_input`` + parameter by `Fede Raimondo`_ (:gh:`189`) +- Fix a bug in which relative paths in the YAML ``with`` directive would be + computed relative to the current working directory of the process instead of + the location of the YAML file by `Fede Raimondo`_. (:gh:`191`) +- Fix an issue with datalad cache and locks in which the user-specific + configuration might create a conflict in high throughput systems by `Fede + Raimondo`_ (:gh:`192`) +- Fix a bug in which :class:`.ParcelAggregation` could yield duplicated column + names if two or more parcels were used and label names were not unique by + `Fede Raimondo`_ (:gh:`194`) +- Fix a bug in which :func:`.count` will not be correctly applied across an + axis by `Fede Raimondo`_ (:gh:`195`) +- Fix an issue with datalad cache and locks in which the overriden settings in + Junifer were not propagated to subprocesses, resulting in using the default + settings by `Fede Raimondo`_ (:gh:`199`) +- Fix a bug in which :func:`.get_mask` fails for FunctionalConnectivityBase + class, because of missing extra_input parameter by `Leonard Sasse`_ + (:gh:`200`) +- Fix the output of :class:`.RSSETSMarker` to be 2D by `Synchon Mandal`_ + (:gh:`215`) + + +API Changes +^^^^^^^^^^^ + +- Add ``confounds_format`` parameter to :class:`.PatternDataGrabber` + constructor for improved handling of confounds specified via + ``BOLD_confounds`` data type by `Synchon Mandal`_ (:gh:`158`) +- Rename ``store_table()`` to ``store_vector()`` for storage-like objects and + adapt marker-like objects to use ``"vector"`` in place of ``"table"`` for + storage. Also, improve the logic of storing vectors by `Synchon Mandal`_ + (:gh:`181`) +- Add ``ica_fix`` parameter to :class:`.DataladHCP1200` and :class:`.HCP1200` + datagrabbers to allow for selecting data processed with ICA+FIX. Default + value is ``False`` which changes behaviour since 0.0.1 release. By `Fede + Raimondo`_ (:gh:`183`) +- Add ``pre_run`` parameter to ``_queue_condor`` by `Fede Raimondo`_ + (:gh:`188`) +- Expose ``allow_overlap`` parameter in :class:`.SphereAggregation` and + related markers by `Fede Raimondo`_ (:gh:`190`) +- Rename ``AmplitudeLowFrequencyFluctuationParcels`` and + ``AmplitudeLowFrequencyFluctuationSpheres`` to :class:`.ALFFParcels` and + :class:`.ALFFSpheres` by `Synchon Mandal`_ (:gh:`216`) + + +Improved Documentation +^^^^^^^^^^^^^^^^^^^^^^ + +- Add more documentation on registering parcellations, coordinates, and masks + by `Leonard Sasse`_ (:gh:`166`) +- Migrate and document changelog creation and maintenance via ``towncrier`` by + `Synchon Mandal`_ (:gh:`203`) +- Add copy button to documentation code blocks by `Synchon Mandal`_ (:gh:`205`) +- Add sections *starting* and *help* in the documentation by `Fede Raimondo`_ + (:gh:`210`) +- Shorten Sphinx references across code and docs, and add ``black`` shield in + README by `Synchon Mandal`_ (:gh:`218`) + + +Enhancements +^^^^^^^^^^^^ + +- Organize functional connectivity markers in + ``junifer.markers.functional_connectivity`` by `Synchon Mandal`_ (:gh:`107`) +- Change HCP datagrabber tests to decrease CI running time by `Fede Raimondo`_ + (:gh:`155`) +- Allow :class:`.PartlyCloudyTestingDataGrabber` to be accessible via ``import + junifer.testing.registry`` by `Synchon Mandal`_ (:gh:`160`) +- Update docstrings and fix typo in log message by `Synchon Mandal`_ + (:gh:`165`) +- Add fMRIPrep brain masks to the datagrabber patterns for all datagrabbers in + the aomic sub-package by `Leonard Sasse`_ (:gh:`177`) +- Improved logging output for preprocessing, collecting and pipeline building + from YAML by `Fede Raimondo`_ (:gh:`185`) +- Allow for empty spheres in :class:`.JuniferNiftiSpheresMasker`, that will + result in NaNs. Also, modify the behaviour of the ``collect`` parameter in + HTCondor ``queue`` function to run a collect job even if some of the previous + jobs fail. This is useful to collect the results of a pipeline even if some + of the jobs fail by `Fede Raimondo`_ (:gh:`190`) +- Allow for empty parcels in :class:`.ParcelAggregation`, that will result in + NaNs by `Fede Raimondo`_ (:gh:`194`) +- Improve metadata and data I/O for :class:`.HDF5FeatureStorage` by `Synchon + Mandal`_ (:gh:`196`) +- Force datalad to be non-interactive on *queued* jobs by `Fede Raimondo`_ + (:gh:`201`) +- Add missing ``abstractmethod`` decorators for ``get_valid_inputs`` methods of + :class:`.BaseMarker` and :class:`.BasePreprocessor` by `Synchon Mandal`_ + (:gh:`214`) + + +Features +^^^^^^^^ + +- Add :class:`.EdgeCentricFCParcels` and :class:`.EdgeCentricFCSpheres` by + `Leonard Sasse`_ (:gh:`64`) +- Expose a :func:`.merge_parcellations` function to merge a list of + parcellations by `Leonard Sasse`_ (:gh:`146`) +- Add support for HDF5 feature storage via :class:`.HDF5FeatureStorage` by + `Synchon Mandal`_ (:gh:`147`) +- Add :class:`.TemporalSNRParcels` and :class:`.TemporalSNRSpheres` by `Leonard + Sasse`_ (:gh:`163`) +- Add support for ``Power`` coordinates by `Synchon Mandal`_ (:gh:`167`) +- Add support for ``Dosenbach`` coordinates by `Synchon Mandal`_ (:gh:`168`) +- Add support for nilearn computed masks (``compute_epi_mask``, + ``compute_brain_mask``, ``compute_background_mask``, + ``fetch_icbm152_brain_gm_mask``) by `Fede Raimondo`_ (:gh:`175`) +- Add aggregation function :func:`.count` that returns the number of elements + in a given axis. This allows to count the number of voxels per sphere/parcel + when used as ``method`` in markers by `Fede Raimondo`_ (:gh:`190`) + + junifer 0.0.1 (2022-12-20) --------------------------