From 99f8b5a390550a1c05adc095d1ab562ad25ed7a0 Mon Sep 17 00:00:00 2001
From: Synchon Mandal <synchon@protonmail.com>
Date: Mon, 19 Dec 2022 12:36:27 +0100
Subject: [PATCH 1/6] chore: update step name in ci.yml

---
 .github/workflows/ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 22c99514d..7d58db38d 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -31,7 +31,7 @@ jobs:
       uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
+    - name: Install Python dependencies
       run: |
         python -m pip install --upgrade pip setuptools wheel
         python -m pip install tox tox-gh-actions
-- 
2.52.0


From 695453e08e6942d3584b0ba58c0907a47b5a6470 Mon Sep 17 00:00:00 2001
From: Synchon Mandal <synchon@protonmail.com>
Date: Mon, 19 Dec 2022 12:36:51 +0100
Subject: [PATCH 2/6] update: add step for setting up AFNI in the CI

---
 .github/workflows/ci.yml | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 7d58db38d..8e11f1b55 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -35,6 +35,13 @@ jobs:
       run: |
         python -m pip install --upgrade pip setuptools wheel
         python -m pip install tox tox-gh-actions
+    - name: Install AFNI
+      run: |
+        docker pull afni/afni_make_build
+        echo "export PATH=$PATH:$(pwd)/junifer/api/res/afni" >> ~/.bashrc
+        source ~/.bashrc
+        echo "Using AFNI : $(afni --version)"
+      if: matrix.python-version == 3.10
     - name: Test with tox
       run: |
         tox
-- 
2.52.0


From a9d23f5b91dd51e3e3193595f6c0f25ef3dbc219 Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Mon, 19 Dec 2022 12:57:57 +0100
Subject: [PATCH 3/6] Fix AFNI install + checks

---
 .github/workflows/ci.yml | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 8e11f1b55..7a6f99bfa 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -38,10 +38,11 @@ jobs:
     - name: Install AFNI
       run: |
         docker pull afni/afni_make_build
-        echo "export PATH=$PATH:$(pwd)/junifer/api/res/afni" >> ~/.bashrc
-        source ~/.bashrc
-        echo "Using AFNI : $(afni --version)"
+        echo "$(pwd)/junifer/api/res/afni" >> $GITHUB_PATH
       if: matrix.python-version == 3.10
+    - nane: Check AFNI
+      run: |
+        echo "Using AFNI : $(afni --version)"
     - name: Test with tox
       run: |
         tox
-- 
2.52.0


From 981175f7f9f708b000d52a713e431e642f4a67ba Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Mon, 19 Dec 2022 12:58:30 +0100
Subject: [PATCH 4/6] Forgot the conditional CI

---
 .github/workflows/ci.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 7a6f99bfa..ef7c11ba7 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -43,6 +43,7 @@ jobs:
     - nane: Check AFNI
       run: |
         echo "Using AFNI : $(afni --version)"
+      if: matrix.python-version == 3.10
     - name: Test with tox
       run: |
         tox
-- 
2.52.0


From 317e16ac677c68f1944e02b793ede61007d01624 Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Mon, 19 Dec 2022 13:01:30 +0100
Subject: [PATCH 5/6] run CI if the workflows config change

---
 .github/workflows/ci-docs.yml | 2 ++
 .github/workflows/ci.yml      | 2 ++
 2 files changed, 4 insertions(+)

diff --git a/.github/workflows/ci-docs.yml b/.github/workflows/ci-docs.yml
index 997dca0f8..ac5b6c0c1 100644
--- a/.github/workflows/ci-docs.yml
+++ b/.github/workflows/ci-docs.yml
@@ -4,9 +4,11 @@ on:
   push:
     paths-ignore:
       - 'junifer/**'
+      - '.github/workflows/**'
   pull_request:
     paths-ignore:
       - 'junifer/**'
+      - '.github/workflows/**'
 jobs:
   run-tests:
     runs-on: ubuntu-latest
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index ef7c11ba7..c0e907d1e 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -4,9 +4,11 @@ on:
   push:
     paths:
       - 'junifer/**'
+      - '.github/workflows/**'
   pull_request:
     paths:
       - 'junifer/**'
+      - '.github/workflows/**'
 
 jobs:
   run-tests:
-- 
2.52.0


From f839bd0a8f4e54bba6b920b22fb86afce7182215 Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Mon, 19 Dec 2022 13:01:58 +0100
Subject: [PATCH 6/6] damn typo

---
 .github/workflows/ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index c0e907d1e..8f4b829ab 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -42,7 +42,7 @@ jobs:
         docker pull afni/afni_make_build
         echo "$(pwd)/junifer/api/res/afni" >> $GITHUB_PATH
       if: matrix.python-version == 3.10
-    - nane: Check AFNI
+    - name: Check AFNI
       run: |
         echo "Using AFNI : $(afni --version)"
       if: matrix.python-version == 3.10
-- 
2.52.0