diff --git a/docs/builtin.rst b/docs/builtin.rst index cc51b5948..84bb10ce0 100644 --- a/docs/builtin.rst +++ b/docs/builtin.rst @@ -315,12 +315,158 @@ Planned Coordinates ----------- +.. + Provide a list of the Coordinates that are implemented or planned. + + Version added: The Junifer version in which the parcellation was added. + Available ~~~~~~~~~ +.. list-table:: + :widths: auto + :header-rows: 1 + + * - Name + - Keys + - Version added + - Publication + * - Cognitive action control + - ``CogAC`` + - 0.0.1 + - | Cieslik, E.C., Mueller, V.I., Eickhoff, C.R., Langner, R., Eickhoff, S.B. + | Three key regions for supervisory attentional control: Evidence from neuroimaging + | meta-analyses. + | Neuroscience & Biobehavioral Reviews, Volume 48, Pages 22-34 (2015). + | https://doi.org/10.1016/j.neubiorev.2014.11.003. + * - Cognitive action regulation + - ``CogAR`` + - 0.0.1 + - | Langner, R., Leiberg, S., Hoffstaedter, F., Eickhoff, S.B. + | Towards a human self-regulation system: Common and distinct neural signatures + | of emotional and behavioural control. + | Neuroscience & Biobehavioral Reviews, Volume 90, Pages 400-410 (2018). + | https://doi.org/10.1016/j.neubiorev.2018.04.022. + * - Default mode network + - ``DMNBuckner`` + - 0.0.1 + - | Van Dijk, K.R., Hedden, T., Venkataraman, A. et al. + | Intrinsic functional connectivity as a tool for human connectomics: + | theory, properties, and optimization. + | Journal of neurophysiology, Volume 103(1), Pages 297-321 (2010). + | https://doi.org/10.1152/jn.00783.2009 + | Buckner, R.L., Andrews‐Hanna, J.R., & Schacter, D.L. + | The brain's default network: anatomy, function, and relevance to disease. + | Annals of the New York Academy of Sciences, Volume 1124(1), Pages 1-38 (2008). + | https://doi.org/10.1196/annals.1440.011 + * - Missing formal name + - ``eMDN`` + - 0.0.1 + - Missing publication details + * - Empathic processing + - ``Empathy`` + - 0.0.1 + - | Bzdok, D., Schilbach, L., Vogeley, K. et al. + | Parsing the neural correlates of moral cognition: ALE meta-analysis on morality, + | theory of mind, and empathy. + | Brain Structure and Function, Volume 217(4), Pages 783-796 (2012). + | https://doi.org/10.1007/s00429-012-0380-y + * - Extended social-affective default + - ``eSAD`` + - 0.0.1 + - | Amft, M., Bzdok, D., Laird, A.R. et al. + | Definition and characterization of an extended social-affective default network. + | Brain structure & function, Volume 220, Pages 1031–1049 (2015). + | https://doi.org/10.1007/s00429-013-0698-0 + * - Extended multiple-demand network + - ``extMDN`` + - 0.0.1 + - | Camilleri, J.A., Müller, V.I., Fox, P. et al. + | Definition and characterization of an extended multiple-demand network. + | NeuroImage, Volume 165, Pages 138-147 (2018). + | https://doi.org/10.1016/j.neuroimage.2017.10.020. + * - Motor execution + - ``Motor`` + - 0.0.1 + - | Witt, S.T., Laird, A.R., Meyerand, M.E. + | Functional neuroimaging correlates of finger-tapping task variations: + | An ALE meta-analysis, + | NeuroImage, Volume 42(1), Pages 343-356 (2008). + | https://doi.org/10.1016/j.neuroimage.2008.04.025. + * - Multitasking + - ``MultiTask`` + - 0.0.1 + - | Worringer, B., Langner, R., Koch, I. et al. + | Common and distinct neural correlates of dual-tasking and task-switching: + | a meta-analytic review and a neuro-cognitive processing model of human multitasking. + | Brain structure & function, Volume 224(5), Pages 1845–1869 (2019). + | https://doi.org/10.1007/s00429-019-01870-4 + * - Physiological stress + - ``PhysioStress`` + - 0.0.1 + - | Kogler, L., Müller, V.I., Chang, A. et al. + | Psychosocial versus physiological stress — Meta-analyses on deactivations and + | activations of the neural correlates of stress reactions. + | NeuroImage, Volume 119, Pages 235-251 (2015). + | https://doi.org/10.1016/j.neuroimage.2015.06.059. + * - Reward-related decision making + - ``Rew`` + - 0.0.1 + - | Liu, X., Hairston, J., Schrier, M., Fan, J. + | Common and distinct networks underlying reward valence and processing stages: + | A meta-analysis of functional neuroimaging studies. + | Neuroscience & Biobehavioral Reviews, Volume 35(5), Pages 1219-1236 (2011). + | https://doi.org/10.1016/j.neubiorev.2010.12.012. + * - Missing formal name + - ``Somatosensory`` + - 0.0.1 + - Missing publication details + * - Theory-of-mind cognition + - ``ToM`` + - 0.0.1 + - | Bzdok, D., Schilbach, L., Vogeley, K. et al. + | Parsing the neural correlates of moral cognition: ALE meta-analysis on morality, + | theory of mind, and empathy. + | Brain Structure and Function, Volume 217(4), Pages 783-796 (2012). + | https://doi.org/10.1007/s00429-012-0380-y + * - Vigilant attention + - ``VigAtt`` + - 0.0.1 + - | Langner, R., & Eickhoff, S.B. + | Sustaining attention to simple tasks: a meta-analytic review of the neural + | mechanisms of vigilant attention. + | Psychological bulletin, Volume 139 4, Pages 870-900 (2013). + | https://doi.org/10.1037/a0030694 + * - Working memory + - ``WM`` + - 0.0.1 + - | Rottschy, C., Langner, R., Dogan, I. et al. + | Modelling neural correlates of working memory: A coordinate-based meta-analysis. + | NeuroImage, Volume 60, Pages 830-846 (2012). + | https://doi.org/10.1016/j.neuroimage.2011.11.050. + + Planned ~~~~~~~ +.. list-table:: + :widths: auto + :header-rows: 1 + + * - Name + - Publication + * - Emotional scene and face processing (EmoSF) + - | Sabatinelli, D., Fortune, E.E., Li, Q. et al. + | Emotional perception: Meta-analyses of face and natural scene processing. + | NeuroImage, Volume 54(3), Pages 2524-2533 (2011). + | https://doi.org/10.1016/j.neuroimage.2010.10.011. + * - Perceptuo-motor network + - | Heckner, M.K., Cieslik, E.C., Eickhoff, S.B. et al. + | The Aging Brain and Executive Functions Revisited: Implications from Meta-analytic + | and Functional-Connectivity Evidence. + | Journal of Cognitive Neuroscience, Volume 33(9), Pages 1716–1752 (2021). + | https://doi.org/10.1162/jocn_a_01616 + Masks ----- @@ -344,13 +490,13 @@ Available * - Vickery-Patil (Gray Matter) - | ``GM_prob0.2`` - 0.0.1 - - | Vickery, Sam, & Patil, Kaustubh. (2022). + - | Vickery, Sam, & Patil, Kaustubh. (2022). | Chimpanzee and Human Gray Matter Masks [Data set]. Zenodo. | https://doi.org/10.5281/zenodo.6463123 * - Vickery-Patil (Cortex + Basal Ganglia) - | ``GM_prob0.2_cortex`` - 0.0.1 - - | Vickery, Sam, & Patil, Kaustubh. (2022). + - | Vickery, Sam, & Patil, Kaustubh. (2022). | Chimpanzee and Human Gray Matter Masks [Data set]. Zenodo. | https://doi.org/10.5281/zenodo.6463123