[ENH]: Introduce BOLDWarper #267

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synchon merged 9 commits from feat/bold-warper into main 2023-10-24 14:08:05 +00:00

Conversation 3 Commits 9 Files changed 5 +186

synchon commented 2023-10-18 10:15:10 +00:00 (Migrated from github.com)

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• description of feature/fix
• tests added/passed
• add an entry for the latest changes

This PR introduces BOLDWarper for warping BOLD data via FSL's applywarp.

* [x] description of feature/fix * [x] tests added/passed * [x] add an entry for the latest changes This PR introduces `BOLDWarper` for warping BOLD data via FSL's `applywarp`.

codecov[bot] commented 2023-10-18 10:15:44 +00:00 (Migrated from github.com)

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Codecov Report

Merging #267 (643f421) into main (7b0586f) will decrease coverage by 0.11%.
The diff coverage is 75.00%.

@@            Coverage Diff             @@
##             main     #267      +/-   ##
==========================================
- Coverage   91.63%   91.53%   -0.11%     
==========================================
  Files          87       89       +2     
  Lines        3898     3922      +24     
  Branches      757      759       +2     
==========================================
+ Hits         3572     3590      +18     
- Misses        219      225       +6     
  Partials      107      107              

Flag	Coverage Δ
docs	100.00% <ø> (ø)
junifer	91.53% <75.00%> (-0.11%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files	Coverage Δ
junifer/preprocess/__init__.py	100.00% <100.00%> (ø)
junifer/preprocess/fsl/__init__.py	100.00% <100.00%> (ø)
junifer/preprocess/fsl/bold_warper.py	72.72% <72.72%> (ø)

## [Codecov](https://app.codecov.io/gh/juaml/junifer/pull/267?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) Report > Merging [#267](https://app.codecov.io/gh/juaml/junifer/pull/267?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) (643f421) into [main](https://app.codecov.io/gh/juaml/junifer/commit/7b0586f8f95824bef27a37ea3addd385e9be8e51?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) (7b0586f) will **decrease** coverage by `0.11%`. > The diff coverage is `75.00%`. [](https://app.codecov.io/gh/juaml/junifer/pull/267?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) ```diff @@ Coverage Diff @@ ## main #267 +/- ## ========================================== - Coverage 91.63% 91.53% -0.11% ========================================== Files 87 89 +2 Lines 3898 3922 +24 Branches 757 759 +2 ========================================== + Hits 3572 3590 +18 - Misses 219 225 +6 Partials 107 107 ``` | [Flag](https://app.codecov.io/gh/juaml/junifer/pull/267/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [docs](https://app.codecov.io/gh/juaml/junifer/pull/267/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | `100.00% <ø> (ø)` | | | [junifer](https://app.codecov.io/gh/juaml/junifer/pull/267/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | `91.53% <75.00%> (-0.11%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/juaml/junifer/pull/267?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [junifer/preprocess/\_\_init\_\_.py](https://app.codecov.io/gh/juaml/junifer/pull/267?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9wcmVwcm9jZXNzL19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [junifer/preprocess/fsl/\_\_init\_\_.py](https://app.codecov.io/gh/juaml/junifer/pull/267?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9wcmVwcm9jZXNzL2ZzbC9fX2luaXRfXy5weQ==) | `100.00% <100.00%> (ø)` | | | [junifer/preprocess/fsl/bold\_warper.py](https://app.codecov.io/gh/juaml/junifer/pull/267?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9wcmVwcm9jZXNzL2ZzbC9ib2xkX3dhcnBlci5weQ==) | `72.72% <72.72%> (ø)` | |

github-actions[bot] commented 2023-10-18 10:22:33 +00:00 (Migrated from github.com)

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PR Preview Action v1.4.4
Preview removed because the pull request was closed.
2023-10-24 14:15 UTC

[PR Preview Action](https://github.com/rossjrw/pr-preview-action) v1.4.4 :---: Preview removed because the pull request was closed. 2023-10-24 14:15 UTC <!-- Sticky Pull Request Commentpr-preview -->

fraimondo (Migrated from github.com) approved these changes 2023-10-24 10:22:41 +00:00

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