[ENH]: Add the fMRIprep provided brain mask patterns in AOMIC datagrabbers #177

New issue

Closed

opened 2023-01-27 09:06:45 +00:00 by LeSasse · 0 comments

LeSasse commented

2023-01-27 09:06:45 +00:00

(Migrated from github.com)

Are you requiring a new dataset or marker?

I understand this is not a marker or dataset request

Which feature do you want to include?

fMRIprep outputs brain masks for each element/datatype and these are typically more liberal than the nilearn computed masks. In most cases liberal is better for preprocessing. These can be added to the datagrabber to be accessed as a type.

How do you imagine this integrated in junifer?

I can implement it for the AOMIC datagrabber as discussed in #174

Do you have a sample code that implements this outside of junifer?

No response

Anything else to say?

No response

### Are you requiring a new dataset or marker? - [X] I understand this is not a marker or dataset request ### Which feature do you want to include? fMRIprep outputs brain masks for each element/datatype and these are *typically* more liberal than the nilearn computed masks. In most cases liberal is better for preprocessing. These can be added to the datagrabber to be accessed as a type. ### How do you imagine this integrated in junifer? I can implement it for the AOMIC datagrabber as discussed in #174 ### Do you have a sample code that implements this outside of junifer? _No response_ ### Anything else to say? _No response_