afda3f1e01
This commit instructs curl to follow redirections, in order to properly download example DICOMs. The commit also removes all sudo calls from the scanner output creation script. Instead the script is called via sudo from `.appveyor.yml` In addition the commit adds a script to check the version compatiblity of the installed test environment against variables that hold the versions which are used in ICF
37 lines
1.1 KiB
Bash
Executable file
37 lines
1.1 KiB
Bash
Executable file
#!/bin/bash
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set -e -u
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from_scanner_dir="$1"; shift
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study="$1"; shift
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lower="$1"; shift
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upper="$1"; shift
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# We take example DICOMs from this location
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url_base="https://github.com/datalad/example-dicom-structural/raw/master/dicoms/N2D_"
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# The directory hierarchy in the incoming DICOM directory. This is modeled after
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# an example dataset.
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dicom_hierarchy=${study}_7T8088/incoming/${study}/654321_7T8088/SCANS/1/DICOM
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dicom_base_name=1.3.12.2.1107.5.2.0.79109.30000021070907115904000000007-1
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target_dir="$from_scanner_dir"/"$dicom_hierarchy"
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mkdir -p "$target_dir"
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# Copy N2D_<lower>.dcm to N2D_<upper>.dcm to $from_scanner_dir
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while [ "$lower" -le "$upper" ]; do
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url="$url_base"$(printf "%04d" "$lower").dcm
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dicom_name=${dicom_base_name}-${lower}-$(echo $RANDOM|base64 -).dcm
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target_name="$target_dir"/"$dicom_name"
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echo copying "$url" "->" "$target_name"
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curl -s -L -o "$target_name" "$url"
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lower=$(( "$lower" + 1 ))
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done
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# Create a non-DICOM file to allow testing for correct mtime setting
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cat <<EOF | tee "$target_dir"/info.xml > /dev/null
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<xml><info>This is not a DICOM file</info></xml>
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EOF
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