4f42ddae78Otherwise, users can't display help texts: ``` ❱ singularity exec icf.sif datalad --help 2 ! /bin/sh: 1: less: not found ```
39 lines
1.3 KiB
Modula-2
39 lines
1.3 KiB
Modula-2
Bootstrap: docker
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From: debian:bookworm-slim
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%labels
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Author michael.hanke@gmail.com
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Version v0.1.0
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%help
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INM ICF utilties.
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%post
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# install all non-datalad deps from Debian proper
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apt-get update -qq
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apt-get -y install eatmydata
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eatmydata apt-get -y install --no-install-recommends git python3-pip python3-dicom python3-tqdm less
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# fresh git-annex via the datalad-installer
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python3 -m pip install --break-system-packages datalad-installer
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datalad-installer -E /tmp/dlinstaller_env.sh --sudo ok git-annex -m snapshot
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# datalad-installer cannot install outside /tmp, which will not make it
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# into the final image, move
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mv $(cut -d = -f 2 < /tmp/dlinstaller_env.sh | cut -d : -f 1) /git-annex
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# the inm-icf-utilities
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git clone https://github.com/psychoinformatics-de/inm-icf-utilities.git /inm-icf-utils
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# and the inm-icf-utilities dependencies
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python3 -m pip install --break-system-packages -r /inm-icf-utils/requirements-devel.txt
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# enable "next" extension for patching datalad core, done inside the image, not
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# for a particular user
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git config --system datalad.extensions.load next
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# add the custom ICF scripts to the PATH at runtime
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%environment
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export PATH=/inm-icf-utils/bin:/git-annex:$PATH
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%runscript
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exec "$@"
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