Felix Hoffstaedter
d4cd5a6692
[DATALAD RUNCMD] Compute sub-15
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.9_r2665.simg sh -e -u -x -c '\n mkdir -p {outputs[0]} || true && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "3827f929-f218-4211-9e52-9e59f1dcc1a2",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.9_r2665.simg"
],
"inputs": [
"inputs/ds005479/sub-15/anat/sub-15_T1w.nii.gz"
],
"outputs": [
"sub-15"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
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| .. |
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cat_sub-15_T1w.mat
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[DATALAD RUNCMD] Compute sub-15
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cat_sub-15_T1w.xml
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[DATALAD RUNCMD] Compute sub-15
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catlog_sub-15_T1w.txt
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[DATALAD RUNCMD] Compute sub-15
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catreport_sub-15_T1w.nii.pdf
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[DATALAD RUNCMD] Compute sub-15
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catreportj_sub-15_T1w.nii.jpg
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[DATALAD RUNCMD] Compute sub-15
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