Felix Hoffstaedter
a77390c6df
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing /singularity inputs/ds005479 MRIQC participant --participant-label sub-36 --no-datalad-get --notrack --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "e162781a-4517-445d-ac1b-a1b80f4e35a6",
"exit": 0,
"extra_inputs": [
"code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"inputs/ds005479/sub-36"
],
"outputs": [
"MRIQC"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
217 lines
4.8 KiB
JSON
217 lines
4.8 KiB
JSON
{
|
|
"aor": 0.0004980856423173803,
|
|
"aqi": 0.00357618161209068,
|
|
"bids_meta": {
|
|
"AcquisitionMatrixPE": 84,
|
|
"AcquisitionNumber": 1,
|
|
"AcquisitionTime": "16:09:14.795000",
|
|
"BandwidthPerPixelPhaseEncode": 23.81,
|
|
"BaseResolution": 84,
|
|
"BodyPartExamined": "BRAIN",
|
|
"CoilCombinationMethod": "Sum of Squares",
|
|
"CoilString": "Head_32",
|
|
"ConversionSoftware": "dcm2niix",
|
|
"ConversionSoftwareVersion": "v1.0.20220720",
|
|
"DerivedVendorReportedEchoSpacing": 0.00049999,
|
|
"DeviceSerialNumber": "167119",
|
|
"DwellTime": 2.6e-6,
|
|
"EchoTime": 0.03,
|
|
"EchoTrainLength": 84,
|
|
"EffectiveEchoSpacing": 0.00049999,
|
|
"FileSize": 0.15931421518325806,
|
|
"FileSizeUnits": "GB",
|
|
"FlipAngle": 70,
|
|
"ImageOrientationPatientDICOM": [
|
|
0.999462,
|
|
0.0316802,
|
|
-0.00850846,
|
|
-0.0321078,
|
|
0.997915,
|
|
-0.055988
|
|
],
|
|
"ImageType": [
|
|
"ORIGINAL",
|
|
"PRIMARY",
|
|
"FMRI",
|
|
"NONE"
|
|
],
|
|
"ImageTypeText": [
|
|
"ORIGINAL",
|
|
"PRIMARY",
|
|
"M",
|
|
"ND"
|
|
],
|
|
"ImagingFrequency": 123.239,
|
|
"InPlanePhaseEncodingDirectionDICOM": "COL",
|
|
"InstitutionAddress": "Pasteura 3,Warszawa,District,PL,02093",
|
|
"InstitutionName": "Instytut Biologii Doswiadczalnej",
|
|
"MRAcquisitionType": "2D",
|
|
"MTState": false,
|
|
"MagneticFieldStrength": 3,
|
|
"Manufacturer": "Siemens",
|
|
"ManufacturersModelName": "MAGNETOM Prisma Fit",
|
|
"Modality": "MR",
|
|
"MultibandAccelerationFactor": 2,
|
|
"NonlinearGradientCorrection": false,
|
|
"NumberOfVolumes": 397,
|
|
"ParallelAcquisitionTechnique": "SMS",
|
|
"PartialFourier": 1,
|
|
"PatientPosition": "HFS",
|
|
"PercentPhaseFOV": 100,
|
|
"PercentSampling": 100,
|
|
"PhaseEncodingDirection": "j-",
|
|
"PhaseResolution": 1,
|
|
"PixelBandwidth": 2289,
|
|
"ProcedureStepDescription": "Head32$ PS23a",
|
|
"ProtocolName": "task-fmri_acq-mb2",
|
|
"PulseSequenceDetails": "%SiemensSeq%\\ep2d_bold",
|
|
"PulseSequenceName": "*epfid2d1_84",
|
|
"ReceiveCoilActiveElements": "HEA;HEP",
|
|
"ReceiveCoilName": "Head_32",
|
|
"ReconMatrixPE": 84,
|
|
"RefLinesPE": 23,
|
|
"RepetitionTime": 2,
|
|
"ScanOptions": "FS",
|
|
"ScanningSequence": "EP",
|
|
"SequenceVariant": "SK",
|
|
"SeriesDescription": "task-fmri_acq-mb2",
|
|
"SeriesNumber": 10,
|
|
"ShimSetting": [
|
|
3081,
|
|
-11585,
|
|
6792,
|
|
288,
|
|
19,
|
|
-159,
|
|
67,
|
|
-15
|
|
],
|
|
"SliceThickness": 2.5,
|
|
"SliceTiming": [
|
|
1.4525,
|
|
0,
|
|
0.99,
|
|
0.0675,
|
|
1.0575,
|
|
0.1325,
|
|
1.1225,
|
|
0.2,
|
|
1.19,
|
|
0.265,
|
|
1.255,
|
|
0.33,
|
|
1.32,
|
|
0.3975,
|
|
1.3875,
|
|
0.53,
|
|
1.52,
|
|
0.595,
|
|
1.585,
|
|
0.66,
|
|
1.65,
|
|
0.7275,
|
|
1.7175,
|
|
0.7925,
|
|
1.7825,
|
|
0.86,
|
|
1.85,
|
|
0.925,
|
|
1.915,
|
|
0.4625,
|
|
1.4525,
|
|
0,
|
|
0.99,
|
|
0.0675,
|
|
1.0575,
|
|
0.1325,
|
|
1.1225,
|
|
0.2,
|
|
1.19,
|
|
0.265,
|
|
1.255,
|
|
0.33,
|
|
1.32,
|
|
0.3975,
|
|
1.3875,
|
|
0.53,
|
|
1.52,
|
|
0.595,
|
|
1.585,
|
|
0.66,
|
|
1.65,
|
|
0.7275,
|
|
1.7175,
|
|
0.7925,
|
|
1.7825,
|
|
0.86,
|
|
1.85,
|
|
0.925,
|
|
1.915,
|
|
0.4625
|
|
],
|
|
"SoftwareVersions": "syngo MR XA30",
|
|
"SpacingBetweenSlices": 2.5,
|
|
"StationName": "AWP167119",
|
|
"TaskName": "MID",
|
|
"TotalReadoutTime": 0.0414992,
|
|
"TxRefAmp": 277.141,
|
|
"dataset": "<unset>",
|
|
"datatype": "func",
|
|
"extension": ".nii.gz",
|
|
"modality": "bold",
|
|
"subject": "36",
|
|
"suffix": "bold",
|
|
"task": "MID"
|
|
},
|
|
"dummy_trs": 0,
|
|
"dvars_nstd": 22.27082607464645,
|
|
"dvars_std": 1.0622697592424248,
|
|
"dvars_vstd": 0.9777216111363641,
|
|
"efc": 0.5334,
|
|
"fber": 374.1913,
|
|
"fd_mean": 0.06602092500996551,
|
|
"fd_num": 2,
|
|
"fd_perc": 0.5037783375314862,
|
|
"fwhm_avg": 3.4397266666666666,
|
|
"fwhm_x": 3.388528,
|
|
"fwhm_y": 3.414096,
|
|
"fwhm_z": 3.516556,
|
|
"gcor": 0.00711369,
|
|
"gsr_x": -0.0205561313778162,
|
|
"gsr_y": 0.09241481870412827,
|
|
"provenance": {
|
|
"md5sum": "7355cb6de7f0a634453d10154b9ec2d7",
|
|
"settings": {
|
|
"fd_thres": 0.2,
|
|
"testing": false
|
|
},
|
|
"software": "mriqc",
|
|
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
|
|
},
|
|
"size_t": 397,
|
|
"size_x": 84,
|
|
"size_y": 84,
|
|
"size_z": 60,
|
|
"snr": 1.9209592061843421,
|
|
"spacing_tr": 2.0,
|
|
"spacing_x": 2.5,
|
|
"spacing_y": 2.5,
|
|
"spacing_z": 2.5,
|
|
"summary_bg_k": 43.4278,
|
|
"summary_bg_mad": 7.5773,
|
|
"summary_bg_mean": 29.7556,
|
|
"summary_bg_median": 13.0,
|
|
"summary_bg_n": 330050.0,
|
|
"summary_bg_p05": 7.0,
|
|
"summary_bg_p95": 109.0,
|
|
"summary_bg_stdv": 46.5097,
|
|
"summary_fg_k": 0.6787,
|
|
"summary_fg_mad": 122.0663,
|
|
"summary_fg_mean": 273.3197,
|
|
"summary_fg_median": 254.0,
|
|
"summary_fg_n": 93310.0,
|
|
"summary_fg_p05": 83.0,
|
|
"summary_fg_p95": 517.0,
|
|
"summary_fg_stdv": 132.2249,
|
|
"tsnr": 59.53205276536755
|
|
}
|