Felix Hoffstaedter
fbd20fac6a
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing /singularity inputs/ds005479 MRIQC participant --participant-label sub-32 --no-datalad-get --notrack --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "e162781a-4517-445d-ac1b-a1b80f4e35a6",
"exit": 0,
"extra_inputs": [
"code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"inputs/ds005479/sub-32"
],
"outputs": [
"MRIQC"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
177 lines
4.7 KiB
JSON
177 lines
4.7 KiB
JSON
{
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"bids_meta": {
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"AcquisitionMatrixPE": 240,
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"AcquisitionNumber": 1,
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"AcquisitionTime": "13:04:41.942500",
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"BaseResolution": 256,
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"BodyPartExamined": "BRAIN",
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"CoilCombinationMethod": "Adaptive Combine",
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"CoilString": "Head_32",
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"ConversionSoftware": "dcm2niix",
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"ConversionSoftwareVersion": "v1.0.20220720",
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"DeviceSerialNumber": "167119",
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"DwellTime": 8.1e-6,
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"EchoTime": 0.00296,
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"FileSize": 0.01058549527078867,
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"FileSizeUnits": "GB",
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"FlipAngle": 9,
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"ImageOrientationPatientDICOM": [
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0.00354341,
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0.996206,
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0.0869549,
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0.0252915,
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0.0868384,
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-0.995901
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],
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"ImageType": [
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"ORIGINAL",
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"PRIMARY",
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"M",
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"NONE"
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],
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"ImageTypeText": [
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"ORIGINAL",
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"PRIMARY",
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"M",
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"NORM",
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"DIS3D",
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"DIS2D"
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],
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"ImagingFrequency": 123.239,
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"InPlanePhaseEncodingDirectionDICOM": "ROW",
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"InstitutionAddress": "Pasteura 3,Warszawa,District,PL,02093",
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"InstitutionName": "Instytut Biologii Doswiadczalnej",
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"InversionTime": 0.9,
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"MRAcquisitionType": "3D",
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"MTState": false,
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"MagneticFieldStrength": 3,
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"Manufacturer": "Siemens",
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"ManufacturersModelName": "MAGNETOM Prisma Fit",
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"MatrixCoilMode": "GRAPPA",
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"Modality": "MR",
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"NonlinearGradientCorrection": true,
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"NumberOfVolumes": 1,
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"ParallelAcquisitionTechnique": "GRAPPA",
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"ParallelReductionFactorInPlane": 2,
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"PartialFourier": 1,
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"PatientPosition": "HFS",
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"PercentPhaseFOV": 93.75,
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"PercentSampling": 100,
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"PhaseResolution": 1,
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"PixelBandwidth": 241,
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"ProcedureStepDescription": "Head32$ PS23a",
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"ProtocolName": "anat_t1w",
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"PulseSequenceDetails": "%SiemensSeq%\\tfl",
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"PulseSequenceName": "*tfl3d1_16ns",
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"ReceiveCoilActiveElements": "HEA;HEP",
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"ReceiveCoilName": "Head_32",
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"ReconMatrixPE": 240,
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"RefLinesPE": 32,
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"RepetitionTime": 2.3,
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"ScanOptions": "IR",
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"ScanningSequence": "GR\\IR",
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"SequenceVariant": "SK\\SP\\MP",
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"SeriesDescription": "anat_t1w",
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"SeriesNumber": 5,
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"ShimSetting": [
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3083,
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-11591,
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6606,
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38,
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14,
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-26,
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-20,
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-25
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],
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"SliceThickness": 1,
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"SoftwareVersions": "syngo MR XA30",
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"StationName": "AWP167119",
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"TxRefAmp": 303.54,
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"dataset": "<unset>",
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"datatype": "anat",
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"extension": ".nii.gz",
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"modality": "T1w",
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"subject": "32",
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"suffix": "T1w"
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},
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"cjv": 0.5207018587360596,
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"cnr": 1.9131747514238022,
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"efc": 0.6154,
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"fber": 15858.0051,
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"fwhm_avg": 3.6969766666666666,
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"fwhm_x": 3.69547,
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"fwhm_y": 3.86579,
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"fwhm_z": 3.52967,
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"icvs_csf": 0.2636071805446001,
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"icvs_gm": 0.3858429541872869,
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"icvs_wm": 0.350549865268113,
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"inu_med": 0.49819493293762207,
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"inu_range": 0.15448777079582215,
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"provenance": {
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"md5sum": "2e9d53f0c24c125a1f92b261d724bb72",
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"settings": {
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"testing": false
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},
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"software": "mriqc",
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"version": "24.1.0.dev0+gd5b13cb5.d20240826",
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"warnings": {
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"large_rot_frame": true,
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"small_air_mask": false
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}
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},
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"qi_1": 0.0,
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"qi_2": 0.0016036860935935995,
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"rpve_csf": 6.589192760664592,
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"rpve_gm": 6.520841275655299,
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"rpve_wm": 6.631933574921737,
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"size_x": 208,
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"size_y": 240,
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"size_z": 256,
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"snr_csf": 2.374435620884236,
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"snr_gm": 6.175092926369359,
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"snr_total": 6.882487609370043,
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"snr_wm": 12.097934280856535,
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"snrd_csf": 13.36234727220964,
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"snrd_gm": 19.458918215155286,
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"snrd_total": 19.922888606551457,
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"snrd_wm": 26.94740033228944,
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"spacing_x": 1.0,
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"spacing_y": 1.0,
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"spacing_z": 1.0,
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"summary_bg_k": 1208.238,
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"summary_bg_mad": 0.0,
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"summary_bg_mean": 3.0928,
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"summary_bg_median": 0.0,
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"summary_bg_n": 3020828.0,
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"summary_bg_p05": 0.0,
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"summary_bg_p95": 14.0,
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"summary_bg_stdv": 23.5337,
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"summary_csf_k": 0.5674,
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"summary_csf_mad": 141.5379,
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"summary_csf_mean": 476.3567,
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"summary_csf_median": 480.0,
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"summary_csf_n": 501580.40833054343,
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"summary_csf_p05": 144.0,
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"summary_csf_p95": 782.0,
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"summary_csf_stdv": 202.1531,
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"summary_gm_k": 0.012,
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"summary_gm_mad": 80.7353,
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"summary_gm_mean": 704.6955,
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"summary_gm_median": 699.0,
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"summary_gm_n": 734165.3824182483,
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"summary_gm_p05": 524.0,
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"summary_gm_p95": 915.0,
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"summary_gm_stdv": 113.1966,
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"summary_wm_k": 0.455,
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"summary_wm_mad": 59.3335,
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"summary_wm_mean": 951.8616,
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"summary_wm_median": 968.0,
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"summary_wm_n": 667011.2103856304,
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"summary_wm_p05": 792.0,
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"summary_wm_p95": 1056.0,
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"summary_wm_stdv": 80.0136,
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"tpm_overlap_csf": 0.2327598771037263,
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"tpm_overlap_gm": 0.535547351229148,
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"tpm_overlap_wm": 0.5450939456620952,
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"wm2max": 0.48492622458702683
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}
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