Felix Hoffstaedter
0280d17320
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing /singularity inputs/ds005479 MRIQC participant --participant-label sub-25 --no-datalad-get --notrack --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "e162781a-4517-445d-ac1b-a1b80f4e35a6",
"exit": 0,
"extra_inputs": [
"code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"inputs/ds005479/sub-25"
],
"outputs": [
"MRIQC"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
177 lines
4.7 KiB
JSON
177 lines
4.7 KiB
JSON
{
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"bids_meta": {
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"AcquisitionMatrixPE": 240,
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"AcquisitionNumber": 1,
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"AcquisitionTime": "13:40:3.942500",
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"BaseResolution": 256,
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"BodyPartExamined": "BRAIN",
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"CoilCombinationMethod": "Adaptive Combine",
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"CoilString": "Head_32",
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"ConversionSoftware": "dcm2niix",
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"ConversionSoftwareVersion": "v1.0.20220720",
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"DeviceSerialNumber": "167119",
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"DwellTime": 8.1e-6,
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"EchoTime": 0.00296,
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"FileSize": 0.01009036973118782,
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"FileSizeUnits": "GB",
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"FlipAngle": 9,
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"ImageOrientationPatientDICOM": [
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-0.0229821,
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0.999226,
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0.0319339,
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-0.00349829,
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0.0318618,
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-0.999486
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],
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"ImageType": [
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"ORIGINAL",
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"PRIMARY",
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"M",
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"NONE"
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],
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"ImageTypeText": [
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"ORIGINAL",
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"PRIMARY",
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"M",
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"NORM",
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"DIS3D",
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"DIS2D"
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],
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"ImagingFrequency": 123.239,
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"InPlanePhaseEncodingDirectionDICOM": "ROW",
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"InstitutionAddress": "Pasteura 3,Warszawa,District,PL,02093",
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"InstitutionName": "Instytut Biologii Doswiadczalnej",
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"InversionTime": 0.9,
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"MRAcquisitionType": "3D",
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"MTState": false,
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"MagneticFieldStrength": 3,
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"Manufacturer": "Siemens",
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"ManufacturersModelName": "MAGNETOM Prisma Fit",
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"MatrixCoilMode": "GRAPPA",
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"Modality": "MR",
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"NonlinearGradientCorrection": true,
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"NumberOfVolumes": 1,
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"ParallelAcquisitionTechnique": "GRAPPA",
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"ParallelReductionFactorInPlane": 2,
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"PartialFourier": 1,
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"PatientPosition": "HFS",
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"PercentPhaseFOV": 93.75,
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"PercentSampling": 100,
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"PhaseResolution": 1,
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"PixelBandwidth": 241,
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"ProcedureStepDescription": "Head32$ PS23a",
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"ProtocolName": "anat_t1w",
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"PulseSequenceDetails": "%SiemensSeq%\\tfl",
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"PulseSequenceName": "*tfl3d1_16ns",
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"ReceiveCoilActiveElements": "HEA;HEP",
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"ReceiveCoilName": "Head_32",
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"ReconMatrixPE": 240,
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"RefLinesPE": 32,
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"RepetitionTime": 2.3,
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"ScanOptions": "IR",
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"ScanningSequence": "GR\\IR",
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"SequenceVariant": "SK\\SP\\MP",
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"SeriesDescription": "anat_t1w",
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"SeriesNumber": 5,
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"ShimSetting": [
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3083,
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-11591,
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6606,
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38,
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14,
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-26,
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-20,
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-25
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],
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"SliceThickness": 1,
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"SoftwareVersions": "syngo MR XA30",
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"StationName": "AWP167119",
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"TxRefAmp": 251.248,
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"dataset": "<unset>",
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"datatype": "anat",
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"extension": ".nii.gz",
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"modality": "T1w",
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"subject": "25",
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"suffix": "T1w"
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},
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"cjv": 0.5196656488549618,
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"cnr": 1.8825402589433435,
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"efc": 0.5799,
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"fber": -1.0,
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"fwhm_avg": 3.495736666666667,
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"fwhm_x": 3.50185,
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"fwhm_y": 3.70146,
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"fwhm_z": 3.2839,
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"icvs_csf": 0.26281608786998867,
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"icvs_gm": 0.38868090326391436,
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"icvs_wm": 0.3485030088660969,
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"inu_med": 0.4765220284461975,
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"inu_range": 0.14254959970712655,
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"provenance": {
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"md5sum": "4fd65fd30e2f0cb1a0a800fe89a3e240",
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"settings": {
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"testing": false
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},
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"software": "mriqc",
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"version": "24.1.0.dev0+gd5b13cb5.d20240826",
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"warnings": {
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"large_rot_frame": true,
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"small_air_mask": false
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}
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},
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"qi_1": 0.0,
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"qi_2": 0.002620301031941736,
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"rpve_csf": 7.327159790450048,
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"rpve_gm": 7.253843281433755,
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"rpve_wm": 7.363798544024644,
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"size_x": 208,
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"size_y": 240,
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"size_z": 256,
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"snr_csf": 2.5063410946057356,
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"snr_gm": 6.882280260916246,
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"snr_total": 6.545099786308942,
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"snr_wm": 10.246678003404845,
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"snrd_csf": 26.442097338044757,
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"snrd_gm": 36.062082167255596,
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"snrd_total": 37.348176395759715,
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"snrd_wm": 49.540349681978796,
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"spacing_x": 1.0,
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"spacing_y": 1.0,
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"spacing_z": 1.0,
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"summary_bg_k": 3532.9051,
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"summary_bg_mad": 0.0,
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"summary_bg_mean": 2.5989,
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"summary_bg_median": 0.0,
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"summary_bg_n": 3650069.0,
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"summary_bg_p05": 0.0,
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"summary_bg_p95": 13.0,
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"summary_bg_stdv": 12.735,
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"summary_csf_k": 6.7488,
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"summary_csf_mad": 152.0519,
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"summary_csf_mean": 505.3269,
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"summary_csf_median": 514.0,
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"summary_csf_n": 450202.38172080275,
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"summary_csf_p05": 166.0,
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"summary_csf_p95": 807.0,
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"summary_csf_stdv": 205.0796,
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"summary_gm_k": 0.102,
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"summary_gm_mad": 72.0552,
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"summary_gm_mean": 705.0343,
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"summary_gm_median": 701.0,
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"summary_gm_n": 665808.0553476992,
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"summary_gm_p05": 542.0,
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"summary_gm_p95": 889.0,
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"summary_gm_stdv": 101.8557,
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"summary_wm_k": 1.182,
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"summary_wm_mad": 64.0972,
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"summary_wm_mean": 939.888,
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"summary_wm_median": 963.0,
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"summary_wm_n": 596983.5632969224,
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"summary_wm_p05": 749.0,
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"summary_wm_p95": 1055.0,
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"summary_wm_stdv": 93.9816,
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"tpm_overlap_csf": 0.23618505425495834,
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"tpm_overlap_gm": 0.5435819687695911,
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"tpm_overlap_wm": 0.5526009065635055,
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"wm2max": 0.4672642124768322
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}
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