ds005479_QCworkflow/MRIQC/sub-24/func/sub-24_task-MID_bold.json
Felix Hoffstaedter 6f0e0adcd0 [DATALAD RUNCMD] Compute MRIQC for sub-24
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing /singularity inputs/ds005479 MRIQC participant --participant-label sub-24 --no-datalad-get --notrack --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e162781a-4517-445d-ac1b-a1b80f4e35a6",
 "exit": 0,
 "extra_inputs": [
  "code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "inputs/ds005479/sub-24"
 ],
 "outputs": [
  "MRIQC"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-06-05 00:28:53 +02:00

217 lines
4.8 KiB
JSON

{
"aor": 0.003198992443324937,
"aqi": 0.02175480619647355,
"bids_meta": {
"AcquisitionMatrixPE": 84,
"AcquisitionNumber": 1,
"AcquisitionTime": "13:43:52.160000",
"BandwidthPerPixelPhaseEncode": 23.81,
"BaseResolution": 84,
"BodyPartExamined": "BRAIN",
"CoilCombinationMethod": "Sum of Squares",
"CoilString": "Head_32",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20220720",
"DerivedVendorReportedEchoSpacing": 0.00049999,
"DeviceSerialNumber": "167119",
"DwellTime": 2.6e-6,
"EchoTime": 0.03,
"EchoTrainLength": 84,
"EffectiveEchoSpacing": 0.00049999,
"FileSize": 0.15852537285536528,
"FileSizeUnits": "GB",
"FlipAngle": 70,
"ImageOrientationPatientDICOM": [
0.999057,
-0.0198996,
0.0385914,
0.0296513,
0.961958,
-0.271582
],
"ImageType": [
"ORIGINAL",
"PRIMARY",
"FMRI",
"NONE"
],
"ImageTypeText": [
"ORIGINAL",
"PRIMARY",
"M",
"ND"
],
"ImagingFrequency": 123.239,
"InPlanePhaseEncodingDirectionDICOM": "COL",
"InstitutionAddress": "Pasteura 3,Warszawa,District,PL,02093",
"InstitutionName": "Instytut Biologii Doswiadczalnej",
"MRAcquisitionType": "2D",
"MTState": false,
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "MAGNETOM Prisma Fit",
"Modality": "MR",
"MultibandAccelerationFactor": 2,
"NonlinearGradientCorrection": false,
"NumberOfVolumes": 397,
"ParallelAcquisitionTechnique": "SMS",
"PartialFourier": 1,
"PatientPosition": "HFS",
"PercentPhaseFOV": 100,
"PercentSampling": 100,
"PhaseEncodingDirection": "j-",
"PhaseResolution": 1,
"PixelBandwidth": 2289,
"ProcedureStepDescription": "Head32$ PS23a",
"ProtocolName": "task-fmri_acq-mb2",
"PulseSequenceDetails": "%SiemensSeq%\\ep2d_bold",
"PulseSequenceName": "*epfid2d1_84",
"ReceiveCoilActiveElements": "HEA;HEP",
"ReceiveCoilName": "Head_32",
"ReconMatrixPE": 84,
"RefLinesPE": 23,
"RepetitionTime": 2,
"ScanOptions": "FS",
"ScanningSequence": "EP",
"SequenceVariant": "SK",
"SeriesDescription": "task-fmri_acq-mb2",
"SeriesNumber": 8,
"ShimSetting": [
3077,
-11554,
6804,
238,
30,
-112,
-91,
-21
],
"SliceThickness": 2.5,
"SliceTiming": [
1.45,
0,
0.99,
0.065,
1.055,
0.13,
1.12,
0.1975,
1.1875,
0.2625,
1.2525,
0.33,
1.32,
0.395,
1.385,
0.5275,
1.5175,
0.5925,
1.5825,
0.66,
1.65,
0.725,
1.715,
0.79,
1.78,
0.8575,
1.8475,
0.9225,
1.9125,
0.46,
1.45,
0,
0.99,
0.065,
1.055,
0.13,
1.12,
0.1975,
1.1875,
0.2625,
1.2525,
0.33,
1.32,
0.395,
1.385,
0.5275,
1.5175,
0.5925,
1.5825,
0.66,
1.65,
0.725,
1.715,
0.79,
1.78,
0.8575,
1.8475,
0.9225,
1.9125,
0.46
],
"SoftwareVersions": "syngo MR XA30",
"SpacingBetweenSlices": 2.5,
"StationName": "AWP167119",
"TaskName": "MID",
"TotalReadoutTime": 0.0414992,
"TxRefAmp": 307.885,
"dataset": "<unset>",
"datatype": "func",
"extension": ".nii.gz",
"modality": "bold",
"subject": "24",
"suffix": "bold",
"task": "MID"
},
"dummy_trs": 0,
"dvars_nstd": 35.39384636250001,
"dvars_std": 1.0256431060606066,
"dvars_vstd": 0.9543737982828286,
"efc": 0.5687,
"fber": 216.0096,
"fd_mean": 0.2078258818124866,
"fd_num": 148,
"fd_perc": 37.27959697732997,
"fwhm_avg": 3.6091306666666667,
"fwhm_x": 3.4609520000000003,
"fwhm_y": 3.6399120000000003,
"fwhm_z": 3.7265279999999996,
"gcor": 0.0103937,
"gsr_x": 0.05509316176176071,
"gsr_y": 0.10526300966739655,
"provenance": {
"md5sum": "746eeb5cd615ca61c6f74f242e1b7b94",
"settings": {
"fd_thres": 0.2,
"testing": false
},
"software": "mriqc",
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
},
"size_t": 397,
"size_x": 84,
"size_y": 84,
"size_z": 60,
"snr": 2.194300788166284,
"spacing_tr": 2.0,
"spacing_x": 2.5,
"spacing_y": 2.5,
"spacing_z": 2.5,
"summary_bg_k": 27.0297,
"summary_bg_mad": 9.9973,
"summary_bg_mean": 30.7415,
"summary_bg_median": 14.0,
"summary_bg_n": 328047.0,
"summary_bg_p05": 6.0,
"summary_bg_p95": 111.0,
"summary_bg_stdv": 51.2359,
"summary_fg_k": 0.6264,
"summary_fg_mad": 81.7522,
"summary_fg_mean": 215.5828,
"summary_fg_median": 203.0,
"summary_fg_n": 95313.0,
"summary_fg_p05": 77.0,
"summary_fg_p95": 388.0,
"summary_fg_stdv": 92.5119,
"tsnr": 34.734145391732454
}