ds005479_QCworkflow/MRIQC/sub-06/func/sub-06_task-MID_bold.json
Felix Hoffstaedter 34da81d9ea [DATALAD RUNCMD] Compute MRIQC for sub-06
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing /singularity inputs/ds005479 MRIQC participant --participant-label sub-06 --no-datalad-get --notrack --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "e162781a-4517-445d-ac1b-a1b80f4e35a6",
 "exit": 0,
 "extra_inputs": [
  "code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "inputs/ds005479/sub-06"
 ],
 "outputs": [
  "MRIQC"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-06-05 00:31:59 +02:00

217 lines
4.8 KiB
JSON

{
"aor": 0.003846171284634761,
"aqi": 0.010598539471032746,
"bids_meta": {
"AcquisitionMatrixPE": 84,
"AcquisitionNumber": 1,
"AcquisitionTime": "13:14:12.982500",
"BandwidthPerPixelPhaseEncode": 23.81,
"BaseResolution": 84,
"BodyPartExamined": "BRAIN",
"CoilCombinationMethod": "Sum of Squares",
"CoilString": "Head_32",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20220720",
"DerivedVendorReportedEchoSpacing": 0.00049999,
"DeviceSerialNumber": "167119",
"DwellTime": 2.6e-6,
"EchoTime": 0.03,
"EchoTrainLength": 84,
"EffectiveEchoSpacing": 0.00049999,
"FileSize": 0.16088034212589264,
"FileSizeUnits": "GB",
"FlipAngle": 70,
"ImageOrientationPatientDICOM": [
0.998312,
0.0574418,
0.00858673,
-0.0575624,
0.998236,
0.0145292
],
"ImageType": [
"ORIGINAL",
"PRIMARY",
"FMRI",
"NONE"
],
"ImageTypeText": [
"ORIGINAL",
"PRIMARY",
"M",
"ND"
],
"ImagingFrequency": 123.239,
"InPlanePhaseEncodingDirectionDICOM": "COL",
"InstitutionAddress": "Pasteura 3,Warszawa,District,PL,02093",
"InstitutionName": "Instytut Biologii Doswiadczalnej",
"MRAcquisitionType": "2D",
"MTState": false,
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "MAGNETOM Prisma Fit",
"Modality": "MR",
"MultibandAccelerationFactor": 2,
"NonlinearGradientCorrection": false,
"NumberOfVolumes": 397,
"ParallelAcquisitionTechnique": "SMS",
"PartialFourier": 1,
"PatientPosition": "HFS",
"PercentPhaseFOV": 100,
"PercentSampling": 100,
"PhaseEncodingDirection": "j-",
"PhaseResolution": 1,
"PixelBandwidth": 2289,
"ProcedureStepDescription": "Head32$ PS23a",
"ProtocolName": "task-fmri_acq-mb2",
"PulseSequenceDetails": "%SiemensSeq%\\ep2d_bold",
"PulseSequenceName": "*epfid2d1_84",
"ReceiveCoilActiveElements": "HEA;HEP",
"ReceiveCoilName": "Head_32",
"ReconMatrixPE": 84,
"RefLinesPE": 23,
"RepetitionTime": 2,
"ScanOptions": "FS",
"ScanningSequence": "EP",
"SequenceVariant": "SK",
"SeriesDescription": "task-fmri_acq-mb2",
"SeriesNumber": 8,
"ShimSetting": [
3085,
-11580,
6731,
327,
58,
-1,
-42,
-49
],
"SliceThickness": 2.5,
"SliceTiming": [
1.4525,
0,
0.99,
0.065,
1.055,
0.1325,
1.1225,
0.1975,
1.1875,
0.265,
1.2525,
0.33,
1.32,
0.395,
1.385,
0.5275,
1.5175,
0.595,
1.5825,
0.66,
1.65,
0.725,
1.715,
0.7925,
1.7825,
0.8575,
1.8475,
0.925,
1.9125,
0.4625,
1.4525,
0,
0.99,
0.065,
1.055,
0.1325,
1.1225,
0.1975,
1.1875,
0.265,
1.2525,
0.33,
1.32,
0.395,
1.385,
0.5275,
1.5175,
0.595,
1.5825,
0.66,
1.65,
0.725,
1.715,
0.7925,
1.7825,
0.8575,
1.8475,
0.925,
1.9125,
0.4625
],
"SoftwareVersions": "syngo MR XA30",
"SpacingBetweenSlices": 2.5,
"StationName": "AWP167119",
"TaskName": "MID",
"TotalReadoutTime": 0.0414992,
"TxRefAmp": 255.885,
"dataset": "<unset>",
"datatype": "func",
"extension": ".nii.gz",
"modality": "bold",
"subject": "06",
"suffix": "bold",
"task": "MID"
},
"dummy_trs": 0,
"dvars_nstd": 33.70149447224748,
"dvars_std": 1.2106066231565642,
"dvars_vstd": 1.0216837394696976,
"efc": 0.5409,
"fber": 459.937,
"fd_mean": 0.19306748734538212,
"fd_num": 162,
"fd_perc": 40.806045340050375,
"fwhm_avg": 3.215701333333333,
"fwhm_x": 3.101692,
"fwhm_y": 3.205972,
"fwhm_z": 3.3394399999999997,
"gcor": 0.00988141,
"gsr_x": -0.00047229943447746336,
"gsr_y": 0.10153976827859879,
"provenance": {
"md5sum": "404e3fd51cdc40c7acfa87d5da23f99f",
"settings": {
"fd_thres": 0.2,
"testing": false
},
"software": "mriqc",
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
},
"size_t": 397,
"size_x": 84,
"size_y": 84,
"size_z": 60,
"snr": 1.913222117929619,
"spacing_tr": 2.0,
"spacing_x": 2.5,
"spacing_y": 2.5,
"spacing_z": 2.5,
"summary_bg_k": 21.2499,
"summary_bg_mad": 7.469,
"summary_bg_mean": 32.2099,
"summary_bg_median": 13.0,
"summary_bg_n": 323941.0,
"summary_bg_p05": 7.0,
"summary_bg_p95": 132.0,
"summary_bg_stdv": 50.9534,
"summary_fg_k": 0.492,
"summary_fg_mad": 126.4805,
"summary_fg_mean": 291.059,
"summary_fg_median": 269.0,
"summary_fg_n": 99419.0,
"summary_fg_p05": 86.0,
"summary_fg_p95": 558.0,
"summary_fg_stdv": 140.5998,
"tsnr": 41.224420823156834
}