Felix Hoffstaedter
fb8735a2e4
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing /singularity inputs/ds005479 MRIQC participant --participant-label sub-01 --no-datalad-get --notrack --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "e162781a-4517-445d-ac1b-a1b80f4e35a6",
"exit": 0,
"extra_inputs": [
"code/repronim_containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"inputs/ds005479/sub-01"
],
"outputs": [
"MRIQC"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
217 lines
4.8 KiB
JSON
217 lines
4.8 KiB
JSON
{
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"aor": 0.00502103274559194,
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"aqi": 0.029691083652392945,
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"bids_meta": {
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"AcquisitionMatrixPE": 84,
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"AcquisitionNumber": 1,
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"AcquisitionTime": "14:50:2.725000",
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"BandwidthPerPixelPhaseEncode": 23.81,
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"BaseResolution": 84,
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"BodyPartExamined": "BRAIN",
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"CoilCombinationMethod": "Sum of Squares",
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"CoilString": "Head_32",
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"ConversionSoftware": "dcm2niix",
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"ConversionSoftwareVersion": "v1.0.20220720",
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"DerivedVendorReportedEchoSpacing": 0.00049999,
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"DeviceSerialNumber": "167119",
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"DwellTime": 2.6e-6,
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"EchoTime": 0.03,
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"EchoTrainLength": 84,
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"EffectiveEchoSpacing": 0.00049999,
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"FileSize": 0.15548360254615545,
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"FileSizeUnits": "GB",
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"FlipAngle": 70,
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"ImageOrientationPatientDICOM": [
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-0.0205217,
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],
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"ImageType": [
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"ORIGINAL",
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"PRIMARY",
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"FMRI",
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"NONE"
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],
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"ImageTypeText": [
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"ORIGINAL",
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"PRIMARY",
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"M",
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"ND"
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],
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"ImagingFrequency": 123.239,
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"InPlanePhaseEncodingDirectionDICOM": "COL",
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"InstitutionAddress": "Pasteura 3,Warszawa,District,PL,02093",
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"InstitutionName": "Instytut Biologii Doswiadczalnej",
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"MRAcquisitionType": "2D",
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"MTState": false,
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"MagneticFieldStrength": 3,
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"Manufacturer": "Siemens",
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"ManufacturersModelName": "MAGNETOM Prisma Fit",
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"Modality": "MR",
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"MultibandAccelerationFactor": 2,
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"NonlinearGradientCorrection": false,
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"NumberOfVolumes": 397,
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"ParallelAcquisitionTechnique": "SMS",
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"PartialFourier": 1,
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"PatientPosition": "HFS",
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"PercentPhaseFOV": 100,
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"PercentSampling": 100,
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"PhaseEncodingDirection": "j-",
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"PhaseResolution": 1,
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"PixelBandwidth": 2289,
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"ProcedureStepDescription": "Head32$ PS23a",
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"ProtocolName": "task-fmri_acq-mb2",
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"PulseSequenceDetails": "%SiemensSeq%\\ep2d_bold",
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"PulseSequenceName": "*epfid2d1_84",
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"ReceiveCoilActiveElements": "HEA;HEP",
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"ReceiveCoilName": "Head_32",
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"ReconMatrixPE": 84,
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"RefLinesPE": 23,
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"RepetitionTime": 2,
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"ScanOptions": "FS",
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"ScanningSequence": "EP",
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"SequenceVariant": "SK",
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"SeriesDescription": "task-fmri_acq-mb2",
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"SeriesNumber": 10,
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"ShimSetting": [
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],
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"SliceThickness": 2.5,
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"SliceTiming": [
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],
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"SoftwareVersions": "syngo MR XA30",
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"SpacingBetweenSlices": 2.5,
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"StationName": "AWP167119",
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"TaskName": "MID",
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"TotalReadoutTime": 0.0414992,
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"TxRefAmp": 254.727,
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"dataset": "<unset>",
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"datatype": "func",
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"extension": ".nii.gz",
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"modality": "bold",
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"subject": "01",
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"suffix": "bold",
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"task": "MID"
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},
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"dummy_trs": 0,
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"dvars_std": 1.0927709390656568,
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"efc": 0.5337,
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"fber": 563.2872,
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"fd_mean": 0.15012773142750344,
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"fd_num": 83,
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"fwhm_avg": 3.400768,
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"fwhm_x": 3.234984,
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"fwhm_y": 3.340352,
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"fwhm_z": 3.626968,
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"gcor": 0.00805601,
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"gsr_x": 0.0009038993157446384,
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"provenance": {
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"md5sum": "43b7e6b1d59630122aa2ac079a54eea1",
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"settings": {
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"fd_thres": 0.2,
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"testing": false
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},
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"software": "mriqc",
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"version": "24.1.0.dev0+gd5b13cb5.d20240826"
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},
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"size_t": 397,
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}
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