Felix Hoffstaedter
73782ef499
=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0109 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "2d58dd48-4166-4dc3-9cd1-64f3d0665a8c",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"sourcedata/raw/sub-0109",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
{
|
|
"NumberOfShells": 4,
|
|
"bValues": "Likely DSI",
|
|
"bValuesEstimation": [
|
|
500.0,
|
|
1000.0,
|
|
2000.0,
|
|
3000.0
|
|
],
|
|
"bdiffs_max": 0.116,
|
|
"bdiffs_mean": 0.0647,
|
|
"bdiffs_median": 0.0686,
|
|
"bdiffs_min": 0.0009,
|
|
"bids_meta": {
|
|
"AcquisitionMatrixPE": 140,
|
|
"AcquisitionNumber": 1,
|
|
"AcquisitionTime": "20:49:42.067500",
|
|
"BandwidthPerPixelPhaseEncode": 10.352,
|
|
"BaseResolution": 140,
|
|
"BodyPartExamined": "BRAIN",
|
|
"ConsistencyInfo": "N4_VE11E_LATEST_20181129",
|
|
"ConversionSoftware": "dcm2niix",
|
|
"ConversionSoftwareVersion": "v1.0.20201102",
|
|
"DerivedVendorReportedEchoSpacing": 0.000689998,
|
|
"DeviceSerialNumber": "66112",
|
|
"DiffusionScheme": "Monopolar",
|
|
"DwellTime": 2.1e-6,
|
|
"EchoTime": 0.0884,
|
|
"EchoTrainLength": 105,
|
|
"EffectiveEchoSpacing": 0.000689998,
|
|
"FileSize": 0.22492012102156878,
|
|
"FileSizeUnits": "GB",
|
|
"FlipAngle": 90,
|
|
"ImageComments": "Unaliased MB3/PE3 SENSE1",
|
|
"ImageOrientationPatientDICOM": [
|
|
0.998138,
|
|
-0.0541804,
|
|
-0.0280313,
|
|
0.0580767,
|
|
0.984598,
|
|
0.164908
|
|
],
|
|
"ImageType": [
|
|
"ORIGINAL",
|
|
"PRIMARY",
|
|
"DIFFUSION",
|
|
"NONE",
|
|
"MB",
|
|
"ND",
|
|
"MOSAIC"
|
|
],
|
|
"ImagingFrequency": 123.259,
|
|
"InPlanePhaseEncodingDirectionDICOM": "COL",
|
|
"InstitutionAddress": "Maynard 3,Hanover,NH,US,03755",
|
|
"InstitutionName": "Dartmouth College - PBS",
|
|
"InstitutionalDepartmentName": "Department",
|
|
"MRAcquisitionType": "2D",
|
|
"MagneticFieldStrength": 3,
|
|
"Manufacturer": "Siemens",
|
|
"ManufacturersModelName": "Prisma",
|
|
"Modality": "MR",
|
|
"MultibandAccelerationFactor": 3,
|
|
"NumberOfVolumes": 103,
|
|
"PartialFourier": 0.75,
|
|
"PatientPosition": "HFS",
|
|
"PercentPhaseFOV": 100,
|
|
"PercentSampling": 100,
|
|
"PhaseEncodingDirection": "j-",
|
|
"PhaseEncodingSteps": 105,
|
|
"PhaseResolution": 1,
|
|
"PixelBandwidth": 1700,
|
|
"ProcedureStepDescription": "Wager_Wager^1076_spacetop",
|
|
"ProtocolName": "dwi_acq-96dir-6b0-mb",
|
|
"PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_diff",
|
|
"ReceiveCoilActiveElements": "HEA;HEP",
|
|
"ReceiveCoilName": "Head_32",
|
|
"ReconMatrixPE": 140,
|
|
"RepetitionTime": 4.11,
|
|
"SAR": 0.245501,
|
|
"ScanOptions": "PFP\\FS",
|
|
"ScanningSequence": "EP",
|
|
"SequenceName": "ep_b5#1",
|
|
"SequenceVariant": "SK\\SS",
|
|
"SeriesDescription": "dwi_acq-96dir-6b0-mb",
|
|
"SeriesNumber": 8,
|
|
"ShimSetting": [
|
|
4222,
|
|
-7781,
|
|
-7258,
|
|
318,
|
|
-91,
|
|
33,
|
|
-17,
|
|
88
|
|
],
|
|
"SliceThickness": 1.7,
|
|
"SliceTiming": [
|
|
0,
|
|
2.12,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.605,
|
|
2.7275,
|
|
0.7575,
|
|
2.8775,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.3625,
|
|
3.485,
|
|
1.515,
|
|
3.635,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97,
|
|
0,
|
|
2.12,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.605,
|
|
2.7275,
|
|
0.7575,
|
|
2.8775,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.3625,
|
|
3.485,
|
|
1.515,
|
|
3.635,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97,
|
|
0,
|
|
2.12,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.605,
|
|
2.7275,
|
|
0.7575,
|
|
2.8775,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.3625,
|
|
3.485,
|
|
1.515,
|
|
3.635,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97
|
|
],
|
|
"SoftwareVersions": "syngo MR E11",
|
|
"SpacingBetweenSlices": 1.7,
|
|
"StationName": "AWP66112",
|
|
"TotalReadoutTime": 0.0959097,
|
|
"TxRefAmp": 241.594,
|
|
"WipMemBlock": "1a5571e8-74f0-4d89-a36b-7eaf6f5877f2||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja",
|
|
"acquisition": "96dirX6b0Xmb",
|
|
"dataset": "<unset>",
|
|
"datatype": "dwi",
|
|
"extension": ".nii.gz",
|
|
"modality": "dwi",
|
|
"session": "01",
|
|
"subject": "0109",
|
|
"suffix": "dwi"
|
|
},
|
|
"efc_shell01": 0.3892,
|
|
"efc_shell02": 0.4246,
|
|
"efc_shell03": 0.4336,
|
|
"efc_shell04": 0.4652,
|
|
"efc_shell05": 0.5048,
|
|
"fa_degenerate": 0.0,
|
|
"fa_nans": 0.0,
|
|
"fber_shell01": 4646.3208,
|
|
"fber_shell02": 1895.761,
|
|
"fber_shell03": 847.6194,
|
|
"fber_shell04": 260.792,
|
|
"fber_shell05": 105.4985,
|
|
"fd_mean": 2.1775,
|
|
"fd_num": 101,
|
|
"fd_perc": 98.05825242718447,
|
|
"ndc": 0.9387,
|
|
"provenance": {
|
|
"md5sum": "e7c53df6e0ec4c17cfd87c881aab1850",
|
|
"settings": {
|
|
"testing": false
|
|
},
|
|
"software": "mriqc",
|
|
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
|
|
},
|
|
"sigma_cc": 1036.339,
|
|
"sigma_pca": 235.7301,
|
|
"sigma_piesno": 40.2785,
|
|
"snr_cc_shell0": 4.85,
|
|
"snr_cc_shell1_best": 4.8,
|
|
"snr_cc_shell1_worst": 4.8,
|
|
"snr_cc_shell2_best": 3.43,
|
|
"snr_cc_shell2_worst": 2.2,
|
|
"snr_cc_shell3_best": 2.55,
|
|
"snr_cc_shell3_worst": 1.39,
|
|
"snr_cc_shell4_best": 1.61,
|
|
"snr_cc_shell4_worst": 0.81,
|
|
"spikes_global": 74.58,
|
|
"spikes_slice_i": 150.68,
|
|
"spikes_slice_j": 111.3,
|
|
"spikes_slice_k": 378.44,
|
|
"summary_bg_k": 231.9037,
|
|
"summary_bg_mad": 53.3737,
|
|
"summary_bg_mean": 428.6234,
|
|
"summary_bg_median": 125.0,
|
|
"summary_bg_n": 1280301.0,
|
|
"summary_bg_p05": 69.0,
|
|
"summary_bg_p95": 1880.0,
|
|
"summary_bg_stdv": 1193.8295,
|
|
"summary_fg_k": 4.9535,
|
|
"summary_fg_mad": 4867.3831,
|
|
"summary_fg_mean": 11179.3742,
|
|
"summary_fg_median": 9214.0,
|
|
"summary_fg_n": 307299.0,
|
|
"summary_fg_p05": 2815.0,
|
|
"summary_fg_p95": 26338.0,
|
|
"summary_fg_stdv": 7469.8728,
|
|
"summary_wm_k": 13.4485,
|
|
"summary_wm_mad": 2389.9548,
|
|
"summary_wm_mean": 6732.4005,
|
|
"summary_wm_median": 6488.0,
|
|
"summary_wm_n": 87475.0,
|
|
"summary_wm_p05": 1081.0,
|
|
"summary_wm_p95": 12581.0,
|
|
"summary_wm_stdv": 3496.8679
|
|
}
|