Felix Hoffstaedter
39c8226e28
=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0085 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "2d58dd48-4166-4dc3-9cd1-64f3d0665a8c",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"sourcedata/raw/sub-0085",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
{
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"NumberOfShells": 4,
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"bValues": "Likely DSI",
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"bValuesEstimation": [
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500.0,
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1000.0,
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2000.0,
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3000.0
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],
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"bdiffs_max": 0.1706,
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"bdiffs_mean": 0.0661,
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"bdiffs_median": 0.0354,
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"bdiffs_min": 0.0005,
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"bids_meta": {
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"AcquisitionMatrixPE": 140,
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"AcquisitionNumber": 1,
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"AcquisitionTime": "21:43:16.075000",
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"BandwidthPerPixelPhaseEncode": 10.352,
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"BaseResolution": 140,
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"BodyPartExamined": "BRAIN",
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"ConsistencyInfo": "N4_VE11E_LATEST_20181129",
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"ConversionSoftware": "dcm2niix",
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"ConversionSoftwareVersion": "v1.0.20201102",
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"DerivedVendorReportedEchoSpacing": 0.000689998,
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"DeviceSerialNumber": "66112",
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"DiffusionScheme": "Monopolar",
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"DwellTime": 2.1e-6,
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"EchoTime": 0.0884,
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"EchoTrainLength": 105,
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"EffectiveEchoSpacing": 0.000689998,
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"FileSize": 0.22572942730039358,
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"FileSizeUnits": "GB",
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"FlipAngle": 90,
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"ImageComments": "Unaliased MB3/PE3 SENSE1",
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"ImageOrientationPatientDICOM": [
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0.996722,
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0.0736789,
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0.0334114,
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-0.0800192,
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0.958656,
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0.273085
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],
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"ImageType": [
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"ORIGINAL",
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"PRIMARY",
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"DIFFUSION",
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"NONE",
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"MB",
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"ND",
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"MOSAIC"
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],
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"ImagingFrequency": 123.252,
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"InPlanePhaseEncodingDirectionDICOM": "COL",
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"InstitutionAddress": "Maynard 3,Hanover,NH,US,03755",
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"InstitutionName": "Dartmouth College - PBS",
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"InstitutionalDepartmentName": "Department",
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"MRAcquisitionType": "2D",
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"MagneticFieldStrength": 3,
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"Manufacturer": "Siemens",
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"ManufacturersModelName": "Prisma",
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"Modality": "MR",
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"MultibandAccelerationFactor": 3,
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"NumberOfVolumes": 103,
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"PartialFourier": 0.75,
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"PatientPosition": "HFS",
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"PercentPhaseFOV": 100,
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"PercentSampling": 100,
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"PhaseEncodingDirection": "j-",
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"PhaseEncodingSteps": 105,
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"PhaseResolution": 1,
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"PixelBandwidth": 1700,
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"ProcedureStepDescription": "Wager_Wager^1076_spacetop",
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"ProtocolName": "dwi_acq-96dir-6b0-mb",
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"PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_diff",
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"ReceiveCoilActiveElements": "HEA;HEP",
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"ReceiveCoilName": "Head_32",
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"ReconMatrixPE": 140,
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"RepetitionTime": 4.11,
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"SAR": 0.281523,
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"ScanOptions": "PFP\\FS",
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"ScanningSequence": "EP",
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"SequenceName": "ep_b5#1",
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"SequenceVariant": "SK\\SS",
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"SeriesDescription": "dwi_acq-96dir-6b0-mb",
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"SeriesNumber": 8,
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"ShimSetting": [
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4168,
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-7773,
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-7210,
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598,
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-8,
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-284,
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170,
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11
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],
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"SliceThickness": 1.7,
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"SliceTiming": [
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0,
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2.12,
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0.15,
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2.2725,
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0.3025,
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2.4225,
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0.455,
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2.575,
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0.605,
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2.7275,
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0.7575,
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2.8775,
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0.9075,
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3.03,
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1.06,
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3.18,
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1.2125,
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3.3325,
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1.3625,
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3.485,
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1.515,
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3.635,
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1.665,
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3.7875,
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1.8175,
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3.9375,
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1.97,
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0,
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2.12,
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0.15,
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2.2725,
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0.3025,
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2.4225,
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0.455,
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2.575,
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0.605,
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2.7275,
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0.7575,
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2.8775,
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0.9075,
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3.03,
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1.06,
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3.18,
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1.2125,
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3.3325,
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1.3625,
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3.485,
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1.515,
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3.635,
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1.665,
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3.7875,
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1.8175,
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3.9375,
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1.97,
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0,
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2.12,
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0.15,
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2.2725,
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0.3025,
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2.4225,
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0.455,
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2.575,
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0.605,
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2.7275,
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0.7575,
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2.8775,
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0.9075,
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3.03,
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1.06,
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3.18,
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1.2125,
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3.3325,
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1.3625,
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3.485,
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1.515,
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3.635,
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1.665,
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3.7875,
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1.8175,
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3.9375,
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1.97
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],
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"SoftwareVersions": "syngo MR E11",
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"SpacingBetweenSlices": 1.7,
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"StationName": "AWP66112",
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"TotalReadoutTime": 0.0959097,
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"TxRefAmp": 252.803,
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"WipMemBlock": "fe7419fc-87a2-4375-9aea-778c8ea04017||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja",
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"acquisition": "96dirX6b0Xmb",
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"dataset": "<unset>",
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"datatype": "dwi",
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"extension": ".nii.gz",
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"modality": "dwi",
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"session": "01",
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"subject": "0085",
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"suffix": "dwi"
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},
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"efc_shell01": 0.3809,
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"efc_shell02": 0.4221,
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"efc_shell03": 0.4341,
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"efc_shell04": 0.4664,
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"efc_shell05": 0.5062,
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"fa_degenerate": 0.0,
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"fa_nans": 0.0,
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"fber_shell01": 4044.7427,
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"fber_shell02": 1742.0156,
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"fber_shell03": 818.9202,
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"fber_shell04": 267.8535,
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"fber_shell05": 114.1869,
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"fd_mean": 4.8824,
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"fd_num": 101,
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"fd_perc": 98.05825242718447,
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"ndc": 0.8561,
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"provenance": {
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"md5sum": "5afed13f61da648ff351417ff7d79495",
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"settings": {
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"testing": false
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},
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"software": "mriqc",
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"version": "24.1.0.dev0+gd5b13cb5.d20240826"
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},
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"sigma_cc": 2442.5872,
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"sigma_pca": 241.5512,
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"sigma_piesno": 42.2594,
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"snr_cc_shell0": 2.03,
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"snr_cc_shell1_best": 2.02,
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"snr_cc_shell1_worst": 2.02,
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"snr_cc_shell2_best": 1.46,
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"snr_cc_shell2_worst": 0.97,
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"snr_cc_shell3_best": 1.03,
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"snr_cc_shell3_worst": 0.65,
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"snr_cc_shell4_best": 0.64,
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"snr_cc_shell4_worst": 0.35,
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"spikes_global": 81.54,
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"spikes_slice_i": 395.54,
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"spikes_slice_j": 273.11,
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"spikes_slice_k": 267.49,
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"summary_bg_k": 148.3171,
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"summary_bg_mad": 57.8215,
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"summary_bg_mean": 487.9096,
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"summary_bg_median": 131.0,
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"summary_bg_n": 1283610.0,
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"summary_bg_p05": 71.0,
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"summary_bg_p95": 2140.0,
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"summary_bg_stdv": 1323.7344,
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"summary_fg_k": 5.488,
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"summary_fg_mad": 5227.6554,
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"summary_fg_median": 9006.0,
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"summary_fg_stdv": 8291.1779,
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"summary_wm_k": 15.7049,
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"summary_wm_median": 6746.0,
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"summary_wm_n": 82127.0,
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"summary_wm_p05": 1729.0,
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"summary_wm_p95": 11227.0,
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"summary_wm_stdv": 3239.5842
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}
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