ds005256-mriqc/sub-0070/ses-01/dwi/sub-0070_ses-01_acq-96dirX6b0Xmb_dwi.json
Felix Hoffstaedter 1b6ac97a27 [DATALAD RUNCMD] Compute MRIQC for sub-0070
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0070 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "2d58dd48-4166-4dc3-9cd1-64f3d0665a8c",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-0070",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-18 23:24:05 +02:00

259 lines
5.8 KiB (Stored with Git Annex)
JSON

{
"NumberOfShells": 4,
"bValues": "Likely DSI",
"bValuesEstimation": [
500.0,
1000.0,
2000.0,
3000.0
],
"bdiffs_max": 0.0735,
"bdiffs_mean": 0.0202,
"bdiffs_median": 0.0177,
"bdiffs_min": 0.0011,
"bids_meta": {
"AcquisitionMatrixPE": 140,
"AcquisitionNumber": 1,
"AcquisitionTime": "10:40:15.062500",
"BandwidthPerPixelPhaseEncode": 10.352,
"BaseResolution": 140,
"BodyPartExamined": "BRAIN",
"ConsistencyInfo": "N4_VE11E_LATEST_20181129",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20201102",
"DerivedVendorReportedEchoSpacing": 0.000689998,
"DeviceSerialNumber": "66112",
"DiffusionScheme": "Monopolar",
"DwellTime": 2.1e-6,
"EchoTime": 0.0884,
"EchoTrainLength": 105,
"EffectiveEchoSpacing": 0.000689998,
"FileSize": 0.22939103562384844,
"FileSizeUnits": "GB",
"FlipAngle": 90,
"ImageComments": "Unaliased MB3/PE3 SENSE1",
"ImageOrientationPatientDICOM": [
0.999911,
0.00718802,
-0.0112041,
-0.00471202,
0.978307,
0.207109
],
"ImageType": [
"ORIGINAL",
"PRIMARY",
"DIFFUSION",
"NONE",
"MB",
"ND",
"MOSAIC"
],
"ImagingFrequency": 123.252,
"InPlanePhaseEncodingDirectionDICOM": "COL",
"InstitutionAddress": "Maynard 3,Hanover,NH,US,03755",
"InstitutionName": "Dartmouth College - PBS",
"InstitutionalDepartmentName": "Department",
"MRAcquisitionType": "2D",
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Prisma",
"Modality": "MR",
"MultibandAccelerationFactor": 3,
"NumberOfVolumes": 103,
"PartialFourier": 0.75,
"PatientPosition": "HFS",
"PercentPhaseFOV": 100,
"PercentSampling": 100,
"PhaseEncodingDirection": "j-",
"PhaseEncodingSteps": 105,
"PhaseResolution": 1,
"PixelBandwidth": 1700,
"ProcedureStepDescription": "Wager_Wager^1076_spacetop",
"ProtocolName": "dwi_acq-96dir-6b0-mb",
"PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_diff",
"ReceiveCoilActiveElements": "HEA;HEP",
"ReceiveCoilName": "Head_32",
"ReconMatrixPE": 140,
"RepetitionTime": 4.11,
"SAR": 0.265714,
"ScanOptions": "PFP\\FS",
"ScanningSequence": "EP",
"SequenceName": "ep_b5#1",
"SequenceVariant": "SK\\SS",
"SeriesDescription": "dwi_acq-96dir-6b0-mb",
"SeriesNumber": 8,
"ShimSetting": [
4142,
-7789,
-7251,
437,
-75,
-225,
38,
64
],
"SliceThickness": 1.7,
"SliceTiming": [
0,
2.12,
0.1525,
2.2725,
0.3025,
2.425,
0.455,
2.575,
0.605,
2.7275,
0.7575,
2.8775,
0.91,
3.03,
1.06,
3.1825,
1.2125,
3.3325,
1.3625,
3.485,
1.515,
3.635,
1.6675,
3.7875,
1.8175,
3.9375,
1.97,
0,
2.12,
0.1525,
2.2725,
0.3025,
2.425,
0.455,
2.575,
0.605,
2.7275,
0.7575,
2.8775,
0.91,
3.03,
1.06,
3.1825,
1.2125,
3.3325,
1.3625,
3.485,
1.515,
3.635,
1.6675,
3.7875,
1.8175,
3.9375,
1.97,
0,
2.12,
0.1525,
2.2725,
0.3025,
2.425,
0.455,
2.575,
0.605,
2.7275,
0.7575,
2.8775,
0.91,
3.03,
1.06,
3.1825,
1.2125,
3.3325,
1.3625,
3.485,
1.515,
3.635,
1.6675,
3.7875,
1.8175,
3.9375,
1.97
],
"SoftwareVersions": "syngo MR E11",
"SpacingBetweenSlices": 1.7,
"StationName": "AWP66112",
"TotalReadoutTime": 0.0959097,
"TxRefAmp": 300.696,
"WipMemBlock": "63f74a9e-1719-4a54-8c50-bfd53dd28063||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja",
"acquisition": "96dirX6b0Xmb",
"dataset": "<unset>",
"datatype": "dwi",
"extension": ".nii.gz",
"modality": "dwi",
"session": "01",
"subject": "0070",
"suffix": "dwi"
},
"efc_shell01": 0.4124,
"efc_shell02": 0.4337,
"efc_shell03": 0.4452,
"efc_shell04": 0.4787,
"efc_shell05": 0.5152,
"fa_degenerate": 0.0,
"fa_nans": 0.0,
"fber_shell01": 4294.5728,
"fber_shell02": 1885.2289,
"fber_shell03": 962.6447,
"fber_shell04": 319.2794,
"fber_shell05": 130.5045,
"fd_mean": 2.393,
"fd_num": 102,
"fd_perc": 99.02912621359224,
"ndc": 0.5276,
"provenance": {
"md5sum": "69487d30a67ab1e5ae6543a4a11d58ca",
"settings": {
"testing": false
},
"software": "mriqc",
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
},
"sigma_cc": 1293.5704,
"sigma_pca": 244.6871,
"sigma_piesno": 42.2594,
"snr_cc_shell0": 5.22,
"snr_cc_shell1_best": 5.18,
"snr_cc_shell1_worst": 5.18,
"snr_cc_shell2_best": 3.77,
"snr_cc_shell2_worst": 2.51,
"snr_cc_shell3_best": 2.71,
"snr_cc_shell3_worst": 1.47,
"snr_cc_shell4_best": 1.89,
"snr_cc_shell4_worst": 0.76,
"spikes_global": 72.77,
"spikes_slice_i": 383.56,
"spikes_slice_j": 221.74,
"spikes_slice_k": 278.38,
"summary_bg_k": 153.8704,
"summary_bg_mad": 60.7867,
"summary_bg_mean": 586.4903,
"summary_bg_median": 131.0,
"summary_bg_n": 1277485.0,
"summary_bg_p05": 71.0,
"summary_bg_p95": 2568.0,
"summary_bg_stdv": 1723.5594,
"summary_fg_k": 8.7338,
"summary_fg_mad": 4938.548,
"summary_fg_mean": 10780.0165,
"summary_fg_median": 9492.0,
"summary_fg_n": 310115.0,
"summary_fg_p05": 2962.0,
"summary_fg_p95": 22620.0,
"summary_fg_stdv": 6815.9049,
"summary_wm_k": 27.6634,
"summary_wm_mad": 3269.1379,
"summary_wm_mean": 7526.563,
"summary_wm_median": 7405.0,
"summary_wm_n": 104503.0,
"summary_wm_p05": 2596.0,
"summary_wm_p95": 12775.0,
"summary_wm_stdv": 3888.9818
}