Felix Hoffstaedter
a21c68c0ec
=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0053 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "2d58dd48-4166-4dc3-9cd1-64f3d0665a8c",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"sourcedata/raw/sub-0053",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
{
|
|
"NumberOfShells": 4,
|
|
"bValues": "Likely DSI",
|
|
"bValuesEstimation": [
|
|
500.0,
|
|
1000.0,
|
|
2000.0,
|
|
3000.0
|
|
],
|
|
"bdiffs_max": 0.0981,
|
|
"bdiffs_mean": 0.0222,
|
|
"bdiffs_median": 0.0236,
|
|
"bdiffs_min": 0.0008,
|
|
"bids_meta": {
|
|
"AcquisitionMatrixPE": 140,
|
|
"AcquisitionNumber": 1,
|
|
"AcquisitionTime": "14:38:13.052500",
|
|
"BandwidthPerPixelPhaseEncode": 10.352,
|
|
"BaseResolution": 140,
|
|
"BodyPartExamined": "BRAIN",
|
|
"ConsistencyInfo": "N4_VE11E_LATEST_20181129",
|
|
"ConversionSoftware": "dcm2niix",
|
|
"ConversionSoftwareVersion": "v1.0.20201102",
|
|
"DerivedVendorReportedEchoSpacing": 0.000689998,
|
|
"DeviceSerialNumber": "66112",
|
|
"DiffusionScheme": "Monopolar",
|
|
"DwellTime": 2.1e-6,
|
|
"EchoTime": 0.0884,
|
|
"EchoTrainLength": 105,
|
|
"EffectiveEchoSpacing": 0.000689998,
|
|
"FileSize": 0.22694391291588545,
|
|
"FileSizeUnits": "GB",
|
|
"FlipAngle": 90,
|
|
"ImageComments": "Unaliased MB3/PE3 SENSE1",
|
|
"ImageOrientationPatientDICOM": [
|
|
0.992656,
|
|
0.0400876,
|
|
-0.114132,
|
|
-0.0261671,
|
|
0.992313,
|
|
0.120952
|
|
],
|
|
"ImageType": [
|
|
"ORIGINAL",
|
|
"PRIMARY",
|
|
"DIFFUSION",
|
|
"NONE",
|
|
"MB",
|
|
"ND",
|
|
"MOSAIC"
|
|
],
|
|
"ImagingFrequency": 123.252,
|
|
"InPlanePhaseEncodingDirectionDICOM": "COL",
|
|
"InstitutionAddress": "Maynard 3,Hanover,NH,US,03755",
|
|
"InstitutionName": "Dartmouth College - PBS",
|
|
"InstitutionalDepartmentName": "Department",
|
|
"MRAcquisitionType": "2D",
|
|
"MagneticFieldStrength": 3,
|
|
"Manufacturer": "Siemens",
|
|
"ManufacturersModelName": "Prisma",
|
|
"Modality": "MR",
|
|
"MultibandAccelerationFactor": 3,
|
|
"NumberOfVolumes": 103,
|
|
"PartialFourier": 0.75,
|
|
"PatientPosition": "HFS",
|
|
"PercentPhaseFOV": 100,
|
|
"PercentSampling": 100,
|
|
"PhaseEncodingDirection": "j-",
|
|
"PhaseEncodingSteps": 105,
|
|
"PhaseResolution": 1,
|
|
"PixelBandwidth": 1700,
|
|
"ProcedureStepDescription": "Wager_Wager^1076_spacetop",
|
|
"ProtocolName": "dwi_acq-96dir-6b0-mb",
|
|
"PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_diff",
|
|
"ReceiveCoilActiveElements": "HEA;HEP",
|
|
"ReceiveCoilName": "Head_32",
|
|
"ReconMatrixPE": 140,
|
|
"RepetitionTime": 4.11,
|
|
"SAR": 0.232363,
|
|
"ScanOptions": "PFP\\FS",
|
|
"ScanningSequence": "EP",
|
|
"SequenceName": "ep_b5#1",
|
|
"SequenceVariant": "SK\\SS",
|
|
"SeriesDescription": "dwi_acq-96dir-6b0-mb",
|
|
"SeriesNumber": 8,
|
|
"ShimSetting": [
|
|
4116,
|
|
-7709,
|
|
-7308,
|
|
530,
|
|
-37,
|
|
-43,
|
|
-110,
|
|
101
|
|
],
|
|
"SliceThickness": 1.7,
|
|
"SliceTiming": [
|
|
0,
|
|
2.1225,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.6075,
|
|
2.7275,
|
|
0.7575,
|
|
2.88,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.365,
|
|
3.485,
|
|
1.515,
|
|
3.6375,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97,
|
|
0,
|
|
2.1225,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.6075,
|
|
2.7275,
|
|
0.7575,
|
|
2.88,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.365,
|
|
3.485,
|
|
1.515,
|
|
3.6375,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97,
|
|
0,
|
|
2.1225,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.6075,
|
|
2.7275,
|
|
0.7575,
|
|
2.88,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.365,
|
|
3.485,
|
|
1.515,
|
|
3.6375,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97
|
|
],
|
|
"SoftwareVersions": "syngo MR E11",
|
|
"SpacingBetweenSlices": 1.7,
|
|
"StationName": "AWP66112",
|
|
"TotalReadoutTime": 0.0959097,
|
|
"TxRefAmp": 256.632,
|
|
"WipMemBlock": "f6e84910-66c4-411c-895a-9d2f60694398||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 19:06:17 by eja",
|
|
"acquisition": "96dirX6b0Xmb",
|
|
"dataset": "<unset>",
|
|
"datatype": "dwi",
|
|
"extension": ".nii.gz",
|
|
"modality": "dwi",
|
|
"session": "01",
|
|
"subject": "0053",
|
|
"suffix": "dwi"
|
|
},
|
|
"efc_shell01": 0.3971,
|
|
"efc_shell02": 0.4253,
|
|
"efc_shell03": 0.4388,
|
|
"efc_shell04": 0.4768,
|
|
"efc_shell05": 0.5229,
|
|
"fa_degenerate": 0.0,
|
|
"fa_nans": 0.0,
|
|
"fber_shell01": 2967.3186,
|
|
"fber_shell02": 1398.3568,
|
|
"fber_shell03": 705.6734,
|
|
"fber_shell04": 235.9184,
|
|
"fber_shell05": 98.4275,
|
|
"fd_mean": 1.3273,
|
|
"fd_num": 100,
|
|
"fd_perc": 97.0873786407767,
|
|
"ndc": 0.8446,
|
|
"provenance": {
|
|
"md5sum": "cb2386f5edae7f8d041e2082607b53ad",
|
|
"settings": {
|
|
"testing": false
|
|
},
|
|
"software": "mriqc",
|
|
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
|
|
},
|
|
"sigma_cc": 924.4025,
|
|
"sigma_pca": 237.1699,
|
|
"sigma_piesno": 41.2689,
|
|
"snr_cc_shell0": 5.66,
|
|
"snr_cc_shell1_best": 5.68,
|
|
"snr_cc_shell1_worst": 5.68,
|
|
"snr_cc_shell2_best": 3.99,
|
|
"snr_cc_shell2_worst": 2.74,
|
|
"snr_cc_shell3_best": 3.34,
|
|
"snr_cc_shell3_worst": 1.56,
|
|
"snr_cc_shell4_best": 2.16,
|
|
"snr_cc_shell4_worst": 0.88,
|
|
"spikes_global": 78.18,
|
|
"spikes_slice_i": 390.4,
|
|
"spikes_slice_j": 121.57,
|
|
"spikes_slice_k": 415.59,
|
|
"summary_bg_k": 213.9805,
|
|
"summary_bg_mad": 68.1997,
|
|
"summary_bg_mean": 554.9431,
|
|
"summary_bg_median": 135.0,
|
|
"summary_bg_n": 1285304.0,
|
|
"summary_bg_p05": 72.0,
|
|
"summary_bg_p95": 2306.0,
|
|
"summary_bg_stdv": 1712.6306,
|
|
"summary_fg_k": 6.7712,
|
|
"summary_fg_mad": 4501.1803,
|
|
"summary_fg_mean": 9868.6315,
|
|
"summary_fg_median": 8147.0,
|
|
"summary_fg_n": 302296.0,
|
|
"summary_fg_p05": 2211.0,
|
|
"summary_fg_p95": 23445.0,
|
|
"summary_fg_stdv": 6941.6054,
|
|
"summary_wm_k": 20.3241,
|
|
"summary_wm_mad": 2591.5887,
|
|
"summary_wm_mean": 6054.8053,
|
|
"summary_wm_median": 6021.0,
|
|
"summary_wm_n": 103276.0,
|
|
"summary_wm_p05": 993.0,
|
|
"summary_wm_p95": 10588.0,
|
|
"summary_wm_stdv": 3111.7046
|
|
}
|