Felix Hoffstaedter
879116e880
=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0036 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "2d58dd48-4166-4dc3-9cd1-64f3d0665a8c",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"sourcedata/raw/sub-0036",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
{
|
|
"NumberOfShells": 4,
|
|
"bValues": "Likely DSI",
|
|
"bValuesEstimation": [
|
|
500.0,
|
|
1000.0,
|
|
2000.0,
|
|
3000.0
|
|
],
|
|
"bdiffs_max": 0.1149,
|
|
"bdiffs_mean": 0.0627,
|
|
"bdiffs_median": 0.0711,
|
|
"bdiffs_min": 0.001,
|
|
"bids_meta": {
|
|
"AcquisitionMatrixPE": 140,
|
|
"AcquisitionNumber": 1,
|
|
"AcquisitionTime": "09:01:34.107500",
|
|
"BandwidthPerPixelPhaseEncode": 10.352,
|
|
"BaseResolution": 140,
|
|
"BodyPartExamined": "BRAIN",
|
|
"ConsistencyInfo": "N4_VE11C_LATEST_20160120",
|
|
"ConversionSoftware": "dcm2niix",
|
|
"ConversionSoftwareVersion": "v1.0.20201102",
|
|
"DerivedVendorReportedEchoSpacing": 0.000689998,
|
|
"DeviceSerialNumber": "66112",
|
|
"DiffusionScheme": "Monopolar",
|
|
"DwellTime": 2.1e-6,
|
|
"EchoTime": 0.0884,
|
|
"EchoTrainLength": 105,
|
|
"EffectiveEchoSpacing": 0.000689998,
|
|
"FileSize": 0.23083673417568207,
|
|
"FileSizeUnits": "GB",
|
|
"FlipAngle": 90,
|
|
"ImageComments": "Unaliased MB3/PE3 SENSE1",
|
|
"ImageOrientationPatientDICOM": [
|
|
0.998053,
|
|
0.0623454,
|
|
-0.00176849,
|
|
-0.0596449,
|
|
0.962344,
|
|
0.26521
|
|
],
|
|
"ImageType": [
|
|
"ORIGINAL",
|
|
"PRIMARY",
|
|
"DIFFUSION",
|
|
"NONE",
|
|
"MB",
|
|
"ND",
|
|
"MOSAIC"
|
|
],
|
|
"ImagingFrequency": 123.252,
|
|
"InPlanePhaseEncodingDirectionDICOM": "COL",
|
|
"InstitutionAddress": "Maynard 3,Hanover,NH,US,03755",
|
|
"InstitutionName": "Dartmouth College - PBS",
|
|
"InstitutionalDepartmentName": "Department",
|
|
"MRAcquisitionType": "2D",
|
|
"MagneticFieldStrength": 3,
|
|
"Manufacturer": "Siemens",
|
|
"ManufacturersModelName": "Prisma",
|
|
"Modality": "MR",
|
|
"MultibandAccelerationFactor": 3,
|
|
"NumberOfVolumes": 103,
|
|
"PartialFourier": 0.75,
|
|
"PatientPosition": "HFS",
|
|
"PercentPhaseFOV": 100,
|
|
"PercentSampling": 100,
|
|
"PhaseEncodingDirection": "j-",
|
|
"PhaseEncodingSteps": 105,
|
|
"PhaseResolution": 1,
|
|
"PixelBandwidth": 1700,
|
|
"ProcedureStepDescription": "Wager_Wager^1076_spacetop",
|
|
"ProtocolName": "dwi_acq-96dir-6b0-mb",
|
|
"PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_diff",
|
|
"ReceiveCoilActiveElements": "HEA;HEP",
|
|
"ReceiveCoilName": "Head_32",
|
|
"ReconMatrixPE": 140,
|
|
"RepetitionTime": 4.11,
|
|
"SAR": 0.368508,
|
|
"ScanOptions": "PFP\\FS",
|
|
"ScanningSequence": "EP",
|
|
"SequenceName": "ep_b5#1",
|
|
"SequenceVariant": "SK\\SS",
|
|
"SeriesDescription": "dwi_acq-96dir-6b0-mb",
|
|
"SeriesNumber": 8,
|
|
"ShimSetting": [
|
|
4154,
|
|
-7709,
|
|
-7219,
|
|
427,
|
|
-54,
|
|
7,
|
|
100,
|
|
61
|
|
],
|
|
"SliceThickness": 1.7,
|
|
"SliceTiming": [
|
|
0,
|
|
2.12,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.6075,
|
|
2.7275,
|
|
0.7575,
|
|
2.8775,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.365,
|
|
3.485,
|
|
1.515,
|
|
3.635,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97,
|
|
0,
|
|
2.12,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.6075,
|
|
2.7275,
|
|
0.7575,
|
|
2.8775,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.365,
|
|
3.485,
|
|
1.515,
|
|
3.635,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97,
|
|
0,
|
|
2.12,
|
|
0.1525,
|
|
2.2725,
|
|
0.3025,
|
|
2.425,
|
|
0.455,
|
|
2.575,
|
|
0.6075,
|
|
2.7275,
|
|
0.7575,
|
|
2.8775,
|
|
0.91,
|
|
3.03,
|
|
1.06,
|
|
3.1825,
|
|
1.2125,
|
|
3.3325,
|
|
1.365,
|
|
3.485,
|
|
1.515,
|
|
3.635,
|
|
1.6675,
|
|
3.7875,
|
|
1.8175,
|
|
3.94,
|
|
1.97
|
|
],
|
|
"SoftwareVersions": "syngo MR E11",
|
|
"SpacingBetweenSlices": 1.7,
|
|
"StationName": "AWP66112",
|
|
"TotalReadoutTime": 0.0959097,
|
|
"TxRefAmp": 323.927,
|
|
"WipMemBlock": "71fac00d-ed2b-45f8-af23-222c65c625d0||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja",
|
|
"acquisition": "96dirX6b0Xmb",
|
|
"dataset": "<unset>",
|
|
"datatype": "dwi",
|
|
"extension": ".nii.gz",
|
|
"modality": "dwi",
|
|
"session": "01",
|
|
"subject": "0036",
|
|
"suffix": "dwi"
|
|
},
|
|
"efc_shell01": 0.4114,
|
|
"efc_shell02": 0.45,
|
|
"efc_shell03": 0.4592,
|
|
"efc_shell04": 0.4843,
|
|
"efc_shell05": 0.52,
|
|
"fa_degenerate": 0.0,
|
|
"fa_nans": 0.0,
|
|
"fber_shell01": 2784.1094,
|
|
"fber_shell02": 1308.8959,
|
|
"fber_shell03": 607.1275,
|
|
"fber_shell04": 192.9216,
|
|
"fber_shell05": 82.4968,
|
|
"fd_mean": 1.8966,
|
|
"fd_num": 101,
|
|
"fd_perc": 98.05825242718447,
|
|
"ndc": 0.8712,
|
|
"provenance": {
|
|
"md5sum": "49d6ebf5ccb14fd039583c28f4ab5380",
|
|
"settings": {
|
|
"testing": false
|
|
},
|
|
"software": "mriqc",
|
|
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
|
|
},
|
|
"sigma_cc": 2204.6295,
|
|
"sigma_pca": 255.3305,
|
|
"sigma_piesno": 45.2307,
|
|
"snr_cc_shell0": 1.99,
|
|
"snr_cc_shell1_best": 1.99,
|
|
"snr_cc_shell1_worst": 1.99,
|
|
"snr_cc_shell2_best": 1.44,
|
|
"snr_cc_shell2_worst": 0.91,
|
|
"snr_cc_shell3_best": 1.02,
|
|
"snr_cc_shell3_worst": 0.58,
|
|
"snr_cc_shell4_best": 0.69,
|
|
"snr_cc_shell4_worst": 0.37,
|
|
"spikes_global": 126.36,
|
|
"spikes_slice_i": 755.12,
|
|
"spikes_slice_j": 542.8,
|
|
"spikes_slice_k": 471.57,
|
|
"summary_bg_k": 107.4032,
|
|
"summary_bg_mad": 85.9909,
|
|
"summary_bg_mean": 1013.3046,
|
|
"summary_bg_median": 152.0,
|
|
"summary_bg_n": 1246660.0,
|
|
"summary_bg_p05": 72.0,
|
|
"summary_bg_p95": 4323.0,
|
|
"summary_bg_stdv": 3469.6049,
|
|
"summary_fg_k": 5.7805,
|
|
"summary_fg_mad": 5973.4043,
|
|
"summary_fg_mean": 11268.4821,
|
|
"summary_fg_median": 9019.0,
|
|
"summary_fg_n": 340940.0,
|
|
"summary_fg_p05": 2088.0,
|
|
"summary_fg_p95": 29029.0,
|
|
"summary_fg_stdv": 8784.5498,
|
|
"summary_wm_k": 15.2778,
|
|
"summary_wm_mad": 3581.967,
|
|
"summary_wm_mean": 6536.2259,
|
|
"summary_wm_median": 6444.0,
|
|
"summary_wm_n": 118164.0,
|
|
"summary_wm_p05": 1204.0,
|
|
"summary_wm_p95": 12229.0,
|
|
"summary_wm_stdv": 3755.6503
|
|
}
|