=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0019 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "2d58dd48-4166-4dc3-9cd1-64f3d0665a8c",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"sourcedata/raw/sub-0019",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
259 lines
5.8 KiB
(Stored with Git Annex)
JSON
{
|
|
"NumberOfShells": 4,
|
|
"bValues": "Likely DSI",
|
|
"bValuesEstimation": [
|
|
500.0,
|
|
1000.0,
|
|
2000.0,
|
|
3000.0
|
|
],
|
|
"bdiffs_max": 0.2441,
|
|
"bdiffs_mean": 0.0747,
|
|
"bdiffs_median": 0.0487,
|
|
"bdiffs_min": 0.0011,
|
|
"bids_meta": {
|
|
"AcquisitionMatrixPE": 140,
|
|
"AcquisitionNumber": 1,
|
|
"AcquisitionTime": "15:17:1.135000",
|
|
"BandwidthPerPixelPhaseEncode": 10.352,
|
|
"BaseResolution": 140,
|
|
"BodyPartExamined": "BRAIN",
|
|
"ConsistencyInfo": "N4_VE11C_LATEST_20160120",
|
|
"ConversionSoftware": "dcm2niix",
|
|
"ConversionSoftwareVersion": "v1.0.20201102",
|
|
"DerivedVendorReportedEchoSpacing": 0.000689998,
|
|
"DeviceSerialNumber": "66112",
|
|
"DiffusionScheme": "Monopolar",
|
|
"DwellTime": 2.1e-6,
|
|
"EchoTime": 0.0884,
|
|
"EchoTrainLength": 105,
|
|
"EffectiveEchoSpacing": 0.000689998,
|
|
"FileSize": 0.2241221172735095,
|
|
"FileSizeUnits": "GB",
|
|
"FlipAngle": 90,
|
|
"ImageComments": "Unaliased MB3/PE3 SENSE1",
|
|
"ImageOrientationPatientDICOM": [
|
|
0.997797,
|
|
0.0662978,
|
|
0.00231983,
|
|
-0.0643498,
|
|
0.975792,
|
|
-0.209018
|
|
],
|
|
"ImageType": [
|
|
"ORIGINAL",
|
|
"PRIMARY",
|
|
"DIFFUSION",
|
|
"NONE",
|
|
"MB",
|
|
"ND",
|
|
"MOSAIC"
|
|
],
|
|
"ImagingFrequency": 123.253,
|
|
"InPlanePhaseEncodingDirectionDICOM": "COL",
|
|
"InstitutionAddress": "Maynard 3,Hanover,NH,US,03755",
|
|
"InstitutionName": "Dartmouth College - PBS",
|
|
"InstitutionalDepartmentName": "Department",
|
|
"MRAcquisitionType": "2D",
|
|
"MagneticFieldStrength": 3,
|
|
"Manufacturer": "Siemens",
|
|
"ManufacturersModelName": "Prisma",
|
|
"Modality": "MR",
|
|
"MultibandAccelerationFactor": 3,
|
|
"NumberOfVolumes": 103,
|
|
"PartialFourier": 0.75,
|
|
"PatientPosition": "HFS",
|
|
"PercentPhaseFOV": 100,
|
|
"PercentSampling": 100,
|
|
"PhaseEncodingDirection": "j-",
|
|
"PhaseEncodingSteps": 105,
|
|
"PhaseResolution": 1,
|
|
"PixelBandwidth": 1700,
|
|
"ProcedureStepDescription": "Wager_Wager^1076_spacetop",
|
|
"ProtocolName": "dwi_acq-96dir-6b0-mb",
|
|
"PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_diff",
|
|
"ReceiveCoilActiveElements": "HEA;HEP",
|
|
"ReceiveCoilName": "Head_32",
|
|
"ReconMatrixPE": 140,
|
|
"RepetitionTime": 4.11,
|
|
"SAR": 0.219573,
|
|
"ScanOptions": "PFP\\FS",
|
|
"ScanningSequence": "EP",
|
|
"SequenceName": "ep_b5#1",
|
|
"SequenceVariant": "SK\\SS",
|
|
"SeriesDescription": "dwi_acq-96dir-6b0-mb",
|
|
"SeriesNumber": 8,
|
|
"ShimSetting": [
|
|
4166,
|
|
-7778,
|
|
-7234,
|
|
616,
|
|
42,
|
|
-306,
|
|
50,
|
|
43
|
|
],
|
|
"SliceThickness": 1.7,
|
|
"SliceTiming": [
|
|
0,
|
|
2.12,
|
|
0.15,
|
|
2.2725,
|
|
0.3025,
|
|
2.4225,
|
|
0.4525,
|
|
2.575,
|
|
0.605,
|
|
2.725,
|
|
0.7575,
|
|
2.8775,
|
|
0.9075,
|
|
3.0275,
|
|
1.06,
|
|
3.18,
|
|
1.21,
|
|
3.3325,
|
|
1.3625,
|
|
3.4825,
|
|
1.515,
|
|
3.635,
|
|
1.665,
|
|
3.785,
|
|
1.8175,
|
|
3.9375,
|
|
1.9675,
|
|
0,
|
|
2.12,
|
|
0.15,
|
|
2.2725,
|
|
0.3025,
|
|
2.4225,
|
|
0.4525,
|
|
2.575,
|
|
0.605,
|
|
2.725,
|
|
0.7575,
|
|
2.8775,
|
|
0.9075,
|
|
3.0275,
|
|
1.06,
|
|
3.18,
|
|
1.21,
|
|
3.3325,
|
|
1.3625,
|
|
3.4825,
|
|
1.515,
|
|
3.635,
|
|
1.665,
|
|
3.785,
|
|
1.8175,
|
|
3.9375,
|
|
1.9675,
|
|
0,
|
|
2.12,
|
|
0.15,
|
|
2.2725,
|
|
0.3025,
|
|
2.4225,
|
|
0.4525,
|
|
2.575,
|
|
0.605,
|
|
2.725,
|
|
0.7575,
|
|
2.8775,
|
|
0.9075,
|
|
3.0275,
|
|
1.06,
|
|
3.18,
|
|
1.21,
|
|
3.3325,
|
|
1.3625,
|
|
3.4825,
|
|
1.515,
|
|
3.635,
|
|
1.665,
|
|
3.785,
|
|
1.8175,
|
|
3.9375,
|
|
1.9675
|
|
],
|
|
"SoftwareVersions": "syngo MR E11",
|
|
"SpacingBetweenSlices": 1.7,
|
|
"StationName": "AWP66112",
|
|
"TotalReadoutTime": 0.0959097,
|
|
"TxRefAmp": 235.085,
|
|
"WipMemBlock": "60a495f5-0641-4121-949a-44539613fa31||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja",
|
|
"acquisition": "96dirX6b0Xmb",
|
|
"dataset": "<unset>",
|
|
"datatype": "dwi",
|
|
"extension": ".nii.gz",
|
|
"modality": "dwi",
|
|
"session": "01",
|
|
"subject": "0019",
|
|
"suffix": "dwi"
|
|
},
|
|
"efc_shell01": 0.3611,
|
|
"efc_shell02": 0.406,
|
|
"efc_shell03": 0.4172,
|
|
"efc_shell04": 0.4487,
|
|
"efc_shell05": 0.4838,
|
|
"fa_degenerate": 0.0,
|
|
"fa_nans": 0.0,
|
|
"fber_shell01": 5631.7124,
|
|
"fber_shell02": 2363.6628,
|
|
"fber_shell03": 1100.0043,
|
|
"fber_shell04": 366.9072,
|
|
"fber_shell05": 150.8611,
|
|
"fd_mean": 11.0584,
|
|
"fd_num": 100,
|
|
"fd_perc": 97.0873786407767,
|
|
"ndc": 0.8865,
|
|
"provenance": {
|
|
"md5sum": "5f3e6338293c1994593999037419b618",
|
|
"settings": {
|
|
"testing": false
|
|
},
|
|
"software": "mriqc",
|
|
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
|
|
},
|
|
"sigma_cc": 1015.5825,
|
|
"sigma_pca": 239.7591,
|
|
"sigma_piesno": 40.9388,
|
|
"snr_cc_shell0": 5.63,
|
|
"snr_cc_shell1_best": 5.57,
|
|
"snr_cc_shell1_worst": 5.57,
|
|
"snr_cc_shell2_best": 3.63,
|
|
"snr_cc_shell2_worst": 2.56,
|
|
"snr_cc_shell3_best": 2.65,
|
|
"snr_cc_shell3_worst": 1.68,
|
|
"snr_cc_shell4_best": 1.47,
|
|
"snr_cc_shell4_worst": 0.99,
|
|
"spikes_global": 85.87,
|
|
"spikes_slice_i": 469.17,
|
|
"spikes_slice_j": 242.29,
|
|
"spikes_slice_k": 342.28,
|
|
"summary_bg_k": 267.5597,
|
|
"summary_bg_mad": 51.8911,
|
|
"summary_bg_mean": 462.8801,
|
|
"summary_bg_median": 126.0,
|
|
"summary_bg_n": 1317724.0,
|
|
"summary_bg_p05": 71.0,
|
|
"summary_bg_p95": 1850.0,
|
|
"summary_bg_stdv": 1606.5883,
|
|
"summary_fg_k": 5.8621,
|
|
"summary_fg_mad": 5346.2636,
|
|
"summary_fg_mean": 12287.1568,
|
|
"summary_fg_median": 10140.0,
|
|
"summary_fg_n": 269876.0,
|
|
"summary_fg_p05": 3486.0,
|
|
"summary_fg_p95": 29471.0,
|
|
"summary_fg_stdv": 8449.4135,
|
|
"summary_wm_k": 19.745,
|
|
"summary_wm_mad": 2610.8625,
|
|
"summary_wm_mean": 7549.9263,
|
|
"summary_wm_median": 7376.0,
|
|
"summary_wm_n": 78030.0,
|
|
"summary_wm_p05": 3279.0,
|
|
"summary_wm_p95": 12384.0,
|
|
"summary_wm_stdv": 3275.5098
|
|
}
|