ds005256-mriqc/sub-0013/ses-01/dwi/sub-0013_ses-01_acq-96dirX6b0Xmb_dwi.json
Felix Hoffstaedter c7f26d9d7b [DATALAD RUNCMD] Compute MRIQC for sub-0013
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0013 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
 "dsid": "2d58dd48-4166-4dc3-9cd1-64f3d0665a8c",
 "exit": 0,
 "extra_inputs": [
  "code/containers/images/bids/bids-mriqc--24.0.2.sing"
 ],
 "inputs": [
  "sourcedata/raw/sub-0013",
  "sourcedata/raw/dataset_description.json"
 ],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2025-09-19 01:39:20 +02:00

259 lines
5.8 KiB (Stored with Git Annex)
JSON

{
"NumberOfShells": 4,
"bValues": "Likely DSI",
"bValuesEstimation": [
500.0,
1000.0,
2000.0,
3000.0
],
"bdiffs_max": 0.1638,
"bdiffs_mean": 0.0274,
"bdiffs_median": 0.0299,
"bdiffs_min": 0.0015,
"bids_meta": {
"AcquisitionMatrixPE": 140,
"AcquisitionNumber": 1,
"AcquisitionTime": "09:51:39.095000",
"BandwidthPerPixelPhaseEncode": 10.352,
"BaseResolution": 140,
"BodyPartExamined": "BRAIN",
"ConsistencyInfo": "N4_VE11C_LATEST_20160120",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20201102",
"DerivedVendorReportedEchoSpacing": 0.000689998,
"DeviceSerialNumber": "66112",
"DiffusionScheme": "Monopolar",
"DwellTime": 2.1e-6,
"EchoTime": 0.0884,
"EchoTrainLength": 105,
"EffectiveEchoSpacing": 0.000689998,
"FileSize": 0.22349751740694046,
"FileSizeUnits": "GB",
"FlipAngle": 90,
"ImageComments": "Unaliased MB3/PE3 SENSE1",
"ImageOrientationPatientDICOM": [
0.999404,
-0.0280293,
0.0201457,
0.0280904,
0.999602,
-0.0027581
],
"ImageType": [
"ORIGINAL",
"PRIMARY",
"DIFFUSION",
"NONE",
"MB",
"ND",
"MOSAIC"
],
"ImagingFrequency": 123.252,
"InPlanePhaseEncodingDirectionDICOM": "COL",
"InstitutionAddress": "Maynard 3,Hanover,NH,US,03755",
"InstitutionName": "dartmouth_brain_imaging_center",
"InstitutionalDepartmentName": "Department",
"MRAcquisitionType": "2D",
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Prisma",
"Modality": "MR",
"MultibandAccelerationFactor": 3,
"NumberOfVolumes": 103,
"PartialFourier": 0.75,
"PatientPosition": "HFS",
"PercentPhaseFOV": 100,
"PercentSampling": 100,
"PhaseEncodingDirection": "j-",
"PhaseEncodingSteps": 105,
"PhaseResolution": 1,
"PixelBandwidth": 1700,
"ProcedureStepDescription": "Wager_Wager^1076_spacetop",
"ProtocolName": "dwi_acq-96dir-6b0-mb",
"PulseSequenceDetails": "%CustomerSeq%\\cmrr_mbep2d_diff",
"ReceiveCoilActiveElements": "HEA;HEP",
"ReceiveCoilName": "Head_32",
"ReconMatrixPE": 140,
"RepetitionTime": 4.11,
"SAR": 0.247705,
"ScanOptions": "PFP\\FS",
"ScanningSequence": "EP",
"SequenceName": "ep_b5#1",
"SequenceVariant": "SK\\SS",
"SeriesDescription": "dwi_acq-96dir-6b0-mb",
"SeriesNumber": 8,
"ShimSetting": [
4136,
-7743,
-7210,
596,
-179,
-88,
65,
41
],
"SliceThickness": 1.7,
"SliceTiming": [
0,
2.1225,
0.1525,
2.2725,
0.3025,
2.425,
0.455,
2.575,
0.6075,
2.7275,
0.7575,
2.88,
0.91,
3.03,
1.06,
3.1825,
1.2125,
3.3325,
1.365,
3.485,
1.515,
3.635,
1.6675,
3.7875,
1.8175,
3.94,
1.97,
0,
2.1225,
0.1525,
2.2725,
0.3025,
2.425,
0.455,
2.575,
0.6075,
2.7275,
0.7575,
2.88,
0.91,
3.03,
1.06,
3.1825,
1.2125,
3.3325,
1.365,
3.485,
1.515,
3.635,
1.6675,
3.7875,
1.8175,
3.94,
1.97,
0,
2.1225,
0.1525,
2.2725,
0.3025,
2.425,
0.455,
2.575,
0.6075,
2.7275,
0.7575,
2.88,
0.91,
3.03,
1.06,
3.1825,
1.2125,
3.3325,
1.365,
3.485,
1.515,
3.635,
1.6675,
3.7875,
1.8175,
3.94,
1.97
],
"SoftwareVersions": "syngo MR E11",
"SpacingBetweenSlices": 1.7,
"StationName": "AWP66112",
"TotalReadoutTime": 0.0959097,
"TxRefAmp": 248.235,
"WipMemBlock": "d746e6be-48de-45cd-9146-a1ddb4d07180||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:11:25 by eja",
"acquisition": "96dirX6b0Xmb",
"dataset": "<unset>",
"datatype": "dwi",
"extension": ".nii.gz",
"modality": "dwi",
"session": "01",
"subject": "0013",
"suffix": "dwi"
},
"efc_shell01": 0.4028,
"efc_shell02": 0.4277,
"efc_shell03": 0.4388,
"efc_shell04": 0.4716,
"efc_shell05": 0.5109,
"fa_degenerate": 0.0,
"fa_nans": 0.0,
"fber_shell01": 4530.1123,
"fber_shell02": 2040.6973,
"fber_shell03": 1036.5676,
"fber_shell04": 347.8081,
"fber_shell05": 142.8715,
"fd_mean": 1.6516,
"fd_num": 98,
"fd_perc": 95.14563106796116,
"ndc": 0.8591,
"provenance": {
"md5sum": "13a52faf336db167eea4d2b4af87e613",
"settings": {
"testing": false
},
"software": "mriqc",
"version": "24.1.0.dev0+gd5b13cb5.d20240826"
},
"sigma_cc": 686.4448,
"sigma_pca": 230.9176,
"sigma_piesno": 39.9483,
"snr_cc_shell0": 7.69,
"snr_cc_shell1_best": 7.64,
"snr_cc_shell1_worst": 7.64,
"snr_cc_shell2_best": 5.65,
"snr_cc_shell2_worst": 3.29,
"snr_cc_shell3_best": 4.67,
"snr_cc_shell3_worst": 1.72,
"snr_cc_shell4_best": 2.98,
"snr_cc_shell4_worst": 0.86,
"spikes_global": 65.17,
"spikes_slice_i": 214.89,
"spikes_slice_j": 119.0,
"spikes_slice_k": 158.01,
"summary_bg_k": 254.2014,
"summary_bg_mad": 48.9259,
"summary_bg_mean": 424.2955,
"summary_bg_median": 121.0,
"summary_bg_n": 1289303.0,
"summary_bg_p05": 67.0,
"summary_bg_p95": 1893.0,
"summary_bg_stdv": 1242.5861,
"summary_fg_k": 6.1846,
"summary_fg_mad": 4183.9035,
"summary_fg_mean": 9860.6762,
"summary_fg_median": 8757.0,
"summary_fg_n": 298297.0,
"summary_fg_p05": 2376.0,
"summary_fg_p95": 20507.0,
"summary_fg_stdv": 5772.2953,
"summary_wm_k": 22.4241,
"summary_wm_mad": 2093.4343,
"summary_wm_mean": 6878.9841,
"summary_wm_median": 6950.0,
"summary_wm_n": 88868.0,
"summary_wm_p05": 3053.0,
"summary_wm_p95": 10522.0,
"summary_wm_stdv": 2746.4593
}