Felix Hoffstaedter
4ad5cee62c
=== Do not change lines below ===
{
"chain": [],
"cmd": "./code/containers/scripts/singularity_cmd exec code/containers/images/bids/bids-mriqc--24.0.2.sing mriqc sourcedata/raw . participant --participant-label sub-0062 --no-datalad-get --no-sub --verbose --nprocs 1 --mem 3000 --work-dir /tmp --float32 --verbose-reports",
"dsid": "2d58dd48-4166-4dc3-9cd1-64f3d0665a8c",
"exit": 0,
"extra_inputs": [
"code/containers/images/bids/bids-mriqc--24.0.2.sing"
],
"inputs": [
"sourcedata/raw/sub-0062",
"sourcedata/raw/dataset_description.json"
],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
86 lines
2.3 KiB
(Stored with Git Annex)
TOML
86 lines
2.3 KiB
(Stored with Git Annex)
TOML
[environment]
|
|
cache_path = "PosixPath('/home/mriqc/.cache/mriqc')"
|
|
cpu_count = 32
|
|
exec_env = "singularity"
|
|
free_mem = 84.8
|
|
freesurfer_home = "/opt/freesurfer"
|
|
overcommit_policy = "heuristic"
|
|
overcommit_limit = "50%"
|
|
nipype_version = "1.8.6"
|
|
synthstrip_path = "PosixPath('/opt/freesurfer/models/synthstrip.1.pt')"
|
|
templateflow_version = "24.2.0"
|
|
total_memory = 503.5725631713867
|
|
version = "24.1.0.dev0+gd5b13cb5.d20240826"
|
|
|
|
[execution]
|
|
ants_float = false
|
|
bids_dir = "/var/lib/condor/execute/dir_2642866/ds/sourcedata/raw"
|
|
bids_dir_datalad = false
|
|
bids_database_dir = "/tmp/.bids_db-20250917-212919_dc0be23b-eade-4e83-a2c5-fe418689f18c"
|
|
bids_database_wipe = false
|
|
cwd = "/var/lib/condor/execute/dir_2642866/ds"
|
|
datalad_get = false
|
|
debug = false
|
|
dry_run = false
|
|
dsname = "<unset>"
|
|
float32 = true
|
|
layout = "BIDS Layout: /var/lib/condor/execute/dir_2642866/ds/sourcedata/raw"
|
|
log_dir = "/var/lib/condor/execute/dir_2642866/ds/logs"
|
|
log_level = 20
|
|
modalities = [ "T1w", "T2w", "bold", "dwi",]
|
|
no_sub = true
|
|
notrack = false
|
|
output_dir = "/var/lib/condor/execute/dir_2642866/ds"
|
|
participant_label = [ "0062",]
|
|
pdb = false
|
|
reports_only = false
|
|
resource_monitor = false
|
|
run_uuid = "20250917-212919_dc0be23b-eade-4e83-a2c5-fe418689f18c"
|
|
templateflow_home = "/templateflow"
|
|
upload_strict = false
|
|
verbose_reports = true
|
|
webapi_url = "https://mriqc.nimh.nih.gov:443/api/v1"
|
|
work_dir = "/tmp"
|
|
write_graph = false
|
|
|
|
[workflow]
|
|
analysis_level = [ "participant",]
|
|
deoblique = false
|
|
despike = false
|
|
fd_thres = 0.2
|
|
fd_radius = 50
|
|
fft_spikes_detector = false
|
|
inputs_path = "PosixPath('/tmp/inputs-20250917-212919_dc0be23b-eade-4e83-a2c5-fe418689f18c.pkl')"
|
|
min_len_dwi = 7
|
|
min_len_bold = 5
|
|
species = "human"
|
|
template_id = "MNI152NLin2009cAsym"
|
|
|
|
[nipype]
|
|
crashfile_format = "txt"
|
|
get_linked_libs = false
|
|
local_hash_check = true
|
|
memory_gb = 3000
|
|
nprocs = 1
|
|
omp_nthreads = 1
|
|
plugin = "MultiProc"
|
|
remove_node_directories = false
|
|
resource_monitor = false
|
|
stop_on_first_crash = true
|
|
|
|
[settings]
|
|
file_path = "/var/lib/condor/execute/dir_2642866/ds/logs/config-20250917-212919_dc0be23b-eade-4e83-a2c5-fe418689f18c.toml"
|
|
start_time = 1758144559.1089127
|
|
|
|
[execution.bids_filters]
|
|
|
|
[workflow.biggest_file_gb]
|
|
t1w = 0.015573232434689999
|
|
bold = 0.9097080156207085
|
|
dwi = 0.22891699336469173
|
|
|
|
[nipype.plugin_args]
|
|
maxtasksperchild = 1
|
|
raise_insufficient = false
|
|
n_procs = 1
|
|
memory_gb = 3000.0
|