Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0107/figures/sub-0107_ses-03_task-social_acq-mb8_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0107/figures/sub-0107_ses-03_task-social_acq-mb8_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0107/figures/sub-0107_ses-03_task-social_acq-mb8_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0107/figures/sub-0107_ses-03_task-social_acq-mb8_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0107/figures/sub-0107_ses-03_task-social_acq-mb8_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0107/figures/sub-0107_ses-03_task-social_acq-mb8_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0107/figures/sub-0107_ses-03_task-social_acq-mb8_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0107/figures/sub-0107_ses-03_task-social_acq-mb8_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0107/ses-03/func/sub-0107_ses-03_task-social_acq-mb8_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum4388d5f672aa8376002d3aa6c30c6738

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime20:13:57.462500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.990047, 0.0880212, 0.109817, -0.0874885, 0.996119, -0.00966923]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-02_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0793046
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-02_task-social_acq-ap-mb8
SeriesNumber10
ShimSetting[4230, -7796, -7292, 371, -114, -169, 61, 36]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp236.144
WipMemBlocka6b18bc0-d764-42a3-80f8-adaad4466dad||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.6562230587005615, -0.23472528159618378, 0.29765287041664124, 115.26358032226562], [-0.2361544519662857, 2.672513484954834, 9.378582035424188e-05, -92.82630157470703], [0.29463082551956177, 0.02594182640314102, 2.6835429668426514, -102.44097900390625], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0007090940366972477
aqi0.024012738073394494
dummy_trs0
dvarsnstd42.864432583490206
dvarsstd1.2640312481859926
dvarsvstd1.0035297016877154
efc0.4976
fber4301.2368
fdmean0.08705506083798208
fdnum27
fdperc3.096330275229358
fwhmavg2.6062548182545666
fwhmx2.4989126676940066
fwhmy2.9069073852393816
fwhmz2.412944401830313
gcor0.0140095
gsrx-0.018059002235531807
gsry0.033279988914728165
sizet872
sizex82
sizey82
sizez56
snr3.8003608870596235
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk20.6182
summarybgmad44.6719
summarybgmean198.1594
summarybgmedian50.0
summarybgn296953.0
summarybgp0515.0
summarybgp95976.0
summarybgstdv374.8617
summaryfgk2.2287
summaryfgmad509.8045
summaryfgmean3104.9636
summaryfgmedian3299.0
summaryfgn79591.0
summaryfgp05985.0
summaryfgp954084.0
summaryfgstdv868.07
tsnr37.397130753379315
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