Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0095/figures/sub-0095_ses-02_task-narratives_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0095/figures/sub-0095_ses-02_task-narratives_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0095/figures/sub-0095_ses-02_task-narratives_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0095/figures/sub-0095_ses-02_task-narratives_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0095/figures/sub-0095_ses-02_task-narratives_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0095/figures/sub-0095_ses-02_task-narratives_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0095/figures/sub-0095_ses-02_task-narratives_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0095/figures/sub-0095_ses-02_task-narratives_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0095/ses-02/func/sub-0095_ses-02_task-narratives_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum3cc7df933be4cfd4b176110df0d0aa61

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime14:59:19.780000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.996341, 0.0671637, 0.052858, -0.0607643, 0.991558, -0.114548]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-narratives_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0894719
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-narratives_acq-ap-mb8
SeriesNumber8
ShimSetting[4238, -7792, -7219, 205, -129, -180, -85, 65]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamenarratives
TotalReadoutTime0.03969
TxRefAmp249.17
WipMemBlock577a3ef9-fe45-4387-b146-cf7edd1beefc||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.673109531402588, -0.16302607953548431, 0.16228428483009338, 116.10147094726562], [-0.1801954209804535, 2.660276412963867, -0.29947662353515625, -84.20118713378906], [0.14181427657604218, 0.30732470750808716, 2.6784281730651855, -91.3040542602539], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 967]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00040596891191709846
aqi0.017526313886010364
dummy_trs2
dvarsnstd38.47318066006229
dvarsstd1.247215514045644
dvarsvstd0.9960814639937764
efc0.461
fber6888.7236
fdmean0.08717581942814354
fdnum13
fdperc1.3471502590673574
fwhmavg2.561773584593879
fwhmx2.593536938165261
fwhmy2.7532431161757507
fwhmz2.338540699440626
gcor0.0058553
gsrx-0.009156201034784317
gsry0.02187277562916279
sizet965
sizex82
sizey82
sizez56
snr3.836900359905095
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk26.3909
summarybgmad34.3749
summarybgmean141.8921
summarybgmedian40.0
summarybgn302387.0
summarybgp0513.0
summarybgp95628.0
summarybgstdv285.9547
summaryfgk2.3611
summaryfgmad515.8953
summaryfgmean3121.0311
summaryfgmedian3310.0
summaryfgn74157.0
summaryfgp051003.0
summaryfgp954084.0
summaryfgstdv862.6697
tsnr42.92000785539858
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