Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0095/figures/sub-0095_ses-02_task-faces_acq-mb8_run-03_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0095/figures/sub-0095_ses-02_task-faces_acq-mb8_run-03_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0095/figures/sub-0095_ses-02_task-faces_acq-mb8_run-03_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0095/figures/sub-0095_ses-02_task-faces_acq-mb8_run-03_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0095/figures/sub-0095_ses-02_task-faces_acq-mb8_run-03_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0095/figures/sub-0095_ses-02_task-faces_acq-mb8_run-03_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0095/figures/sub-0095_ses-02_task-faces_acq-mb8_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0095/figures/sub-0095_ses-02_task-faces_acq-mb8_run-03_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0095/ses-02/func/sub-0095_ses-02_task-faces_acq-mb8_run-03_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumd0bce6b04413770662d7d84b64668109

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime15:51:25.670000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.996341, 0.0671637, 0.052858, -0.0607643, 0.991558, -0.114548]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-03_task-faces_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0894428
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-03_task-faces_acq-ap-mb8
SeriesNumber20
ShimSetting[4238, -7792, -7219, 205, -129, -180, -85, 65]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamefaces
TotalReadoutTime0.03969
TxRefAmp249.17
WipMemBlock7ae03208-0a75-441c-a894-1c876e6cf8c2||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.673109531402588, -0.16302607953548431, 0.16228428483009338, 116.10147094726562], [-0.1801954209804535, 2.660276412963867, -0.29947662353515625, -84.20118713378906], [0.14181427657604218, 0.30732470750808716, 2.6784281730651855, -91.3040542602539], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 914]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0006386951754385965
aqi0.021409826535087717
dummy_trs2
dvarsnstd36.152148467596035
dvarsstd1.1969181705598246
dvarsvstd1.0012269702963783
efc0.4575
fber7497.6011
fdmean0.09103327750137812
fdnum33
fdperc3.6184210526315788
fwhmavg2.5839668254151094
fwhmx2.604662846990908
fwhmy2.7851821154142655
fwhmz2.362055513840154
gcor0.0155189
gsrx-0.005975472740828991
gsry0.02654239535331726
sizet912
sizex82
sizey82
sizez56
snr3.848989908003591
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk24.8473
summarybgmad31.8841
summarybgmean134.3551
summarybgmedian38.0
summarybgn302431.0
summarybgp0513.0
summarybgp95581.0
summarybgstdv270.0294
summaryfgk2.3804
summaryfgmad512.3285
summaryfgmean3122.4766
summaryfgmedian3313.0
summaryfgn74113.0
summaryfgp051012.0
summaryfgp954083.0
summaryfgstdv860.7395
tsnr39.40776850329712
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