Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0094/figures/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0094/figures/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0094/figures/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0094/figures/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0094/figures/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0094/figures/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0094/figures/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0094/figures/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0094/ses-04/func/sub-0094_ses-04_task-alignvideo_acq-mb8_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum6aca3803e2ae2dff76f70f266de884b7

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime19:50:19.385000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999064, -0.0130932, 0.0412164, 0.0172644, 0.99458, -0.102531]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-02_task-alignvideo_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.106729
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-02_task-alignvideo_acq-ap-mb8
SeriesNumber32
ShimSetting[4251, -7862, -7213, 634, -42, -269, 295, 83]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamealignvideo
TotalReadoutTime0.03969
TxRefAmp231.029
WipMemBlock821d589a-c531-4cf9-b641-791eee7cf3fa||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.6804168224334717, 0.046319060027599335, 0.10705658793449402, 106.29269409179688], [0.03512817248702049, 2.6683852672576904, -0.2784958779811859, -97.84304809570312], [0.11058070510625839, 0.27508309483528137, 2.6834640502929688, -78.1512222290039], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 926]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0011253246753246753
aqi0.029343990043290042
dummy_trs2
dvarsnstd40.96810546487543
dvarsstd1.1820629448862414
dvarsvstd1.006802582719394
efc0.4626
fber6621.7773
fdmean0.1613846110504486
fdnum227
fdperc24.567099567099568
fwhmavg2.5075198787184685
fwhmx2.4841116680468898
fwhmy2.747573934492733
fwhmz2.2908740336157827
gcor0.0114195
gsrx-0.018509656190872192
gsry0.028975900262594223
sizet924
sizex82
sizey82
sizez56
snr3.9312930005489983
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk26.9083
summarybgmad34.2427
summarybgmean177.5087
summarybgmedian44.0
summarybgn305301.0
summarybgp0516.0
summarybgp95893.0
summarybgstdv378.4099
summaryfgk2.2897
summaryfgmad567.8689
summaryfgmean3436.063
summaryfgmedian3610.0
summaryfgn71243.0
summaryfgp051250.0
summaryfgp954527.0
summaryfgstdv918.2665
tsnr35.39476269856095
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