Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0094/figures/sub-0094_ses-02_task-narratives_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0094/figures/sub-0094_ses-02_task-narratives_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0094/figures/sub-0094_ses-02_task-narratives_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0094/figures/sub-0094_ses-02_task-narratives_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0094/figures/sub-0094_ses-02_task-narratives_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0094/figures/sub-0094_ses-02_task-narratives_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0094/figures/sub-0094_ses-02_task-narratives_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0094/figures/sub-0094_ses-02_task-narratives_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0094/ses-02/func/sub-0094_ses-02_task-narratives_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum64ea4cce8b19d50f875a6f6d91e3b00c

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime11:03:20.295000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.997698, 0.0596292, 0.0322941, -0.060148, 0.998072, 0.0153377]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-narratives_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.113044
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-narratives_acq-ap-mb8
SeriesNumber8
ShimSetting[4257, -7867, -7207, 508, -86, -426, 263, 41]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamenarratives
TotalReadoutTime0.03969
TxRefAmp231.71
WipMemBlocke9112233-5ba3-489c-9c01-95d087534ca6||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.676750898361206, -0.1613726019859314, 0.08455651998519897, 115.10087585449219], [-0.15998074412345886, 2.677753210067749, 0.046561021357774734, -89.55316162109375], [0.08664265275001526, -0.041149940341711044, 2.6982741355895996, -57.943199157714844], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 967]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0001241891891891892
aqi0.02204555550935551
dummy_trs5
dvarsnstd34.48308525322579
dvarsstd1.1322526643288253
dvarsvstd0.9604670057544221
efc0.4544
fber7439.5732
fdmean0.0815387563917895
fdnum4
fdperc0.4158004158004158
fwhmavg2.4940613694614373
fwhmx2.4734330319378524
fwhmy2.7363511165784873
fwhmz2.2723999598679727
gcor0.00224458
gsrx-0.019044920802116394
gsry0.033704355359077454
sizet962
sizex82
sizey82
sizez56
snr3.9505887874265877
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk34.3684
summarybgmad33.2615
summarybgmean166.5906
summarybgmedian42.0
summarybgn306694.0
summarybgp0515.0
summarybgp95834.0
summarybgstdv370.1924
summaryfgk2.4171
summaryfgmad547.5526
summaryfgmean3427.4397
summaryfgmedian3594.0
summaryfgn69850.0
summaryfgp051251.0
summaryfgp954504.0
summaryfgstdv909.7313
tsnr41.752500546048395
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