Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0090/figures/sub-0090_ses-04_task-social_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0090/figures/sub-0090_ses-04_task-social_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0090/figures/sub-0090_ses-04_task-social_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0090/figures/sub-0090_ses-04_task-social_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0090/figures/sub-0090_ses-04_task-social_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0090/figures/sub-0090_ses-04_task-social_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0090/figures/sub-0090_ses-04_task-social_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0090/figures/sub-0090_ses-04_task-social_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0090/ses-04/func/sub-0090_ses-04_task-social_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumb9873c4aa08cdcdaebec2818e35a9027

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime18:07:46.927500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999133, 0.0250495, 0.033249, -0.0261632, 0.999096, 0.0334942]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.108059
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-social_acq-ap-mb8
SeriesNumber12
ShimSetting[4255, -7770, -7254, 240, -17, -60, -177, 12]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp256.653
WipMemBlockac952e61-86b7-4a01-8bd4-932f93632a5d||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.680601119995117, -0.07019394636154175, 0.08742575347423553, 111.6570816040039], [-0.0672059878706932, 2.6805026531219482, 0.09270472824573517, -88.20968627929688], [0.08920454233884811, -0.08986254036426544, 2.696991443634033, -87.2504653930664], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00018769585253456222
aqi0.016666145622119814
dummy_trs4
dvarsnstd37.039417086412904
dvarsstd1.2257338292387545
dvarsvstd0.9956040354094581
efc0.5137
fber5242.9907
fdmean0.07549326586459544
fdnum3
fdperc0.3456221198156682
fwhmavg2.3192940928760666
fwhmx2.1512587668918126
fwhmy2.6160198467201354
fwhmz2.190603665016251
gcor0.00491618
gsrx-0.020024586468935013
gsry0.04713328927755356
sizet868
sizex82
sizey82
sizez56
snr4.234775817034256
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk13.8154
summarybgmad49.9302
summarybgmean221.0117
summarybgmedian54.0
summarybgn288547.0
summarybgp0516.0
summarybgp951068.0
summarybgstdv398.5025
summaryfgk3.1352
summaryfgmad547.0136
summaryfgmean3739.9451
summaryfgmedian3887.0
summaryfgn87997.0
summaryfgp051560.0
summaryfgp954857.0
summaryfgstdv917.871
tsnr46.02871657162905
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