Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0090/figures/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0090/figures/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0090/figures/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0090/figures/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0090/figures/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0090/figures/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0090/figures/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0090/figures/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0090/ses-02/func/sub-0090_ses-02_task-alignvideo_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumc628b5806c7c96b9cd54cca3e8357414

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime11:57:19.697500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.998736, 0.0445342, 0.0232981, -0.0460511, 0.996537, 0.0692311]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-alignvideo_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0944644
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-alignvideo_acq-ap-mb8
SeriesNumber28
ShimSetting[4175, -7741, -7220, 525, 51, -176, -116, -10]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamealignvideo
TotalReadoutTime0.03969
TxRefAmp252.811
WipMemBlocke6e56d79-611f-4e2c-9489-c32089845cf5||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.6795361042022705, -0.12355176359415054, 0.05436257645487785, 115.04322814941406], [-0.11948192119598389, 2.6736364364624023, 0.18958456814289093, -88.79166412353516], [0.06250713765621185, -0.18574197590351105, 2.692786931991577, -60.1358528137207], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 839]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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10611.0, 10596.0, 10575.0, 10607.0, 10595.0, 10559.0, 10545.0, 10642.0, 10596.0, 10585.0, 10575.0, 10640.0, 10607.0, 10585.0, 10538.0, 10581.0, 10572.0, 10571.0, 10554.0, 10617.0, 10596.0, 10581.0, 10609.0, 10628.0, 10609.0, 10643.0, 10644.0, 10528.0, 10479.0, 10529.0, 10538.0, 10501.0, 10602.0, 10539.0, 10567.0, 10515.0, 10601.0, 10570.0, 10536.0, 10483.0, 10550.0, 10579.0, 10554.0, 10570.0, 10574.0, 10622.0, 10567.0, 10525.0, 10464.0, 10489.0, 10498.0, 10497.0, 10459.0, 10510.0, 10513.0, 10479.0, 10445.0, 10464.0, 10530.0, 10508.0, 10488.0, 10490.0, 10572.0, 10543.0, 10541.0, 10522.0, 10540.0, 10610.0, 10563.0, 10550.0, 10499.0, 10592.0, 10544.0, 10538.0, 10526.0, 10582.0, 10551.0, 10512.0, 10577.0, 10568.0, 10564.0, 10558.0, 10620.0, 10582.0, 10553.0, 10531.0, 10576.0, 10563.0, 10523.0, 10621.0, 10588.0, 10563.0, 10577.0, 10592.0, 10576.0, 10537.0, 10615.0, 10575.0, 10564.0, 10553.0, 10621.0, 10577.0, 10556.0, 10592.0, 10628.0, 10622.0, 10588.0, 10640.0, 10607.0, 10602.0, 10551.0, 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aor0.0016708004778972522
aqi0.031019506093189965
dummy_trs2
dvarsnstd39.53662340717707
dvarsstd1.2097022561842101
dvarsvstd1.0144448500478465
efc0.5145
fber4490.5591
fdmean0.10934902077857366
fdnum79
fdperc9.438470728793309
fwhmavg2.3099978454644723
fwhmx2.158266039452019
fwhmy2.584405120201162
fwhmz2.187322376740235
gcor0.0148226
gsrx-0.02274036407470703
gsry0.03669053316116333
sizet837
sizex82
sizey82
sizez56
snr4.346631533323717
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.6999998092651367
summarybgk19.9281
summarybgmad58.5247
summarybgmean239.8136
summarybgmedian62.0
summarybgn288903.0
summarybgp0517.0
summarybgp951118.0
summarybgstdv440.4375
summaryfgk3.1977
summaryfgmad587.8438
summaryfgmean4019.9041
summaryfgmedian4144.0
summaryfgn87641.0
summaryfgp051840.0
summaryfgp955262.0
summaryfgstdv953.3765
tsnr34.702299676369876
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