Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0089/figures/sub-0089_ses-04_task-social_acq-mb8_run-06_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0089/figures/sub-0089_ses-04_task-social_acq-mb8_run-06_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0089/figures/sub-0089_ses-04_task-social_acq-mb8_run-06_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0089/figures/sub-0089_ses-04_task-social_acq-mb8_run-06_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0089/figures/sub-0089_ses-04_task-social_acq-mb8_run-06_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0089/figures/sub-0089_ses-04_task-social_acq-mb8_run-06_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0089/figures/sub-0089_ses-04_task-social_acq-mb8_run-06_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0089/figures/sub-0089_ses-04_task-social_acq-mb8_run-06_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0089/ses-04/func/sub-0089_ses-04_task-social_acq-mb8_run-06_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum32dc0bcfd7e97bbe9c96bbc9e82f72f6

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime17:00:54.207500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.996609, 0.0805125, -0.0169784, -0.0731864, 0.96166, 0.2643]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-06_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0973247
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-06_task-social_acq-ap-mb8
SeriesNumber30
ShimSetting[4228, -7828, -7241, 322, -94, -140, 119, 100]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp230.222
WipMemBlock63d112f4-474a-4515-945b-94a9fa0f9717||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.6738290786743164, -0.1963537186384201, -0.10153857618570328, 122.36677551269531], [-0.21600909531116486, 2.5800623893737793, 0.707835853099823, -112.43775939941406], [-0.04555172473192215, -0.7090982794761658, 2.603585720062256, -30.849742889404297], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0006443053960964409
aqi0.02124343846153846
dummy_trs1
dvarsnstd37.617207752942505
dvarsstd1.246506173103449
dvarsvstd0.9845668546666664
efc0.4493
fber7105.6323
fdmean0.07061485957408199
fdnum7
fdperc0.8036739380022963
fwhmavg2.4838538770226495
fwhmx2.433864305608517
fwhmy2.7342936620820866
fwhmz2.283403663377344
gcor0.0137921
gsrx-0.022529760375618935
gsry0.0245747659355402
sizet871
sizex82
sizey82
sizez56
snr3.523071861277608
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk32.3622
summarybgmad40.1903
summarybgmean193.6348
summarybgmedian46.0
summarybgn311469.0
summarybgp0515.0
summarybgp95927.0
summarybgstdv393.4955
summaryfgk1.7113
summaryfgmad602.0603
summaryfgmean3611.3676
summaryfgmedian3876.0
summaryfgn65075.0
summaryfgp05898.0
summaryfgp954847.0
summaryfgstdv1100.1678
tsnr40.67539303377271
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