Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0089/figures/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0089/figures/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0089/figures/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0089/figures/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0089/figures/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0089/figures/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0089/figures/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0089/figures/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0089/ses-02/func/sub-0089_ses-02_task-alignvideo_acq-mb8_run-04_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumf93ca42b6286b61ee5fcba16eee86add

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime15:57:41.237500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.998575, -0.0232548, -0.0480397, 0.0369651, 0.950599, 0.308213]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-04_task-alignvideo_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.101152
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-04_task-alignvideo_acq-ap-mb8
SeriesNumber34
ShimSetting[4131, -7796, -7290, 673, -40, -274, 58, 125]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamealignvideo
TotalReadoutTime0.03969
TxRefAmp236.2
WipMemBlock69d58c51-75aa-48de-8784-aef11e1ecf7e||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.679102897644043, 0.09917473793029785, -0.10394741594791412, 110.68763732910156], [0.06239088997244835, 2.550387144088745, 0.8357842564582825, -118.33102416992188], [-0.12888698279857635, -0.8269135355949402, 2.565279722213745, -27.592941284179688], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 914]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0001757205720572057
aqi0.01642699295929593
dummy_trs5
dvarsnstd38.73188651909689
dvarsstd1.2504247009140979
dvarsvstd0.9866341980066069
efc0.4495
fber6478.4468
fdmean0.06385306062027792
fdnum2
fdperc0.22002200220022003
fwhmavg2.4783776234111525
fwhmx2.471584304709202
fwhmy2.725996753188991
fwhmz2.2375518123352647
gcor0.00442964
gsrx-0.019832365214824677
gsry0.021776145324110985
sizet909
sizex82
sizey82
sizez56
snr3.4240980139658714
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk37.1112
summarybgmad36.7225
summarybgmean173.9954
summarybgmedian43.0
summarybgn311180.0
summarybgp0515.0
summarybgp95848.0
summarybgstdv351.0936
summaryfgk1.71
summaryfgmad555.7737
summaryfgmean3223.5003
summaryfgmedian3474.0
summaryfgn65364.0
summaryfgp05716.0
summaryfgp954348.0
summaryfgstdv1014.566
tsnr45.43177237221971
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