Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0077/figures/sub-0077_ses-02_task-faces_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0077/figures/sub-0077_ses-02_task-faces_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0077/figures/sub-0077_ses-02_task-faces_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0077/figures/sub-0077_ses-02_task-faces_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0077/figures/sub-0077_ses-02_task-faces_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0077/figures/sub-0077_ses-02_task-faces_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0077/figures/sub-0077_ses-02_task-faces_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0077/figures/sub-0077_ses-02_task-faces_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0077/ses-02/func/sub-0077_ses-02_task-faces_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum64171b614ce72c4fb21ab17c16576d26

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime21:41:26.890000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999572, -0.0250743, 0.0150649, 0.0247781, 0.999502, 0.0195314]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-faces_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0853169
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-faces_acq-ap-mb8
SeriesNumber16
ShimSetting[4143, -7724, -7290, 825, -29, -140, -98, 28]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.315, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamefaces
TotalReadoutTime0.03969
TxRefAmp238.611
WipMemBlock6255bd61-64c6-411a-8967-8643a1b2657d||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.681778907775879, 0.066477932035923, 0.041977208107709885, 111.59534454345703], [0.06727239489555359, 2.681591272354126, 0.05170442909002304, -98.89216613769531], [0.04041796922683716, -0.05240138992667198, 2.699178457260132, -77.53936767578125], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 914]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0006671428571428573
aqi0.030442435714285714
dummy_trs4
dvarsnstd40.18080379218924
dvarsstd1.2626030405720587
dvarsvstd0.964670463982397
efc0.4395
fber8707.2881
fdmean0.08127262852513026
fdnum0
fdperc0.0
fwhmavg2.5655755398353386
fwhmx2.431299942033292
fwhmy2.8958746582296953
fwhmz2.3695520192430295
gcor0.0025519
gsrx-0.01764536090195179
gsry0.024952445179224014
sizet910
sizex82
sizey82
sizez56
snr3.8080974941977703
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.6999998092651367
summarybgk26.1046
summarybgmad24.2886
summarybgmean122.3146
summarybgmedian34.0
summarybgn308549.0
summarybgp0514.0
summarybgp95581.0
summarybgstdv259.7773
summaryfgk2.6504
summaryfgmad425.0309
summaryfgmean2940.778
summaryfgmedian3156.0
summaryfgn67995.0
summaryfgp05884.0
summaryfgp953802.0
summaryfgstdv828.7542
tsnr39.68385837506503
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