Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0055/figures/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0055/figures/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0055/figures/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0055/figures/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0055/figures/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0055/figures/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0055/figures/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0055/figures/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0055/ses-03/func/sub-0055_ses-03_task-alignvideo_acq-mb8_run-03_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumeae7561d5d184ec42430fe64277ec250

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime16:14:3.630000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999898, 0.00892468, 0.0111177, -0.00820234, 0.997954, -0.063404]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-03_task-alignvideo_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0932431
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-03_task-alignvideo_acq-ap-mb8
SeriesNumber32
ShimSetting[4146, -7688, -7291, 582, -28, -154, -89, 91]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamealignvideo
TotalReadoutTime0.03969
TxRefAmp256.935
WipMemBlock40eeb41b-e7b5-455a-a5ab-ebcc4a2f8403||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.6826541423797607, -0.022006290033459663, 0.03148430958390236, 114.70291900634766], [-0.023944256827235222, 2.677438259124756, -0.17092718183994293, -81.94304656982422], [0.029828082770109177, 0.17010830342769623, 2.6944003105163574, -88.2132568359375], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 1065]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0036381526861451463
aqi0.03964532686145146
dummy_trs4
dvarsnstd41.74513438587736
dvarsstd1.2527516338962266
dvarsvstd1.0141189115566023
efc0.5235
fber4964.5552
fdmean0.11837323925075595
fdnum111
fdperc10.461828463713477
fwhmavg2.475136133334814
fwhmx2.339202762410878
fwhmy2.699879753811669
fwhmz2.3863258837818946
gcor0.0136274
gsrx-0.01062876544892788
gsry0.054808665066957474
sizet1061
sizex82
sizey82
sizez56
snr4.340663617051141
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk21.1556
summarybgmad44.6912
summarybgmean205.0421
summarybgmedian49.0
summarybgn284866.0
summarybgp0514.0
summarybgp95992.0
summarybgstdv391.7472
summaryfgk3.4148
summaryfgmad490.1578
summaryfgmean3316.6718
summaryfgmedian3432.0
summaryfgn91678.0
summaryfgp051484.0
summaryfgp954296.0
summaryfgstdv790.6582
tsnr32.72343286732212
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