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    <div id="Basic echo-wise reports" class="mt-5">
    <h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
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<h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p>                    <div class="reportlet">
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<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p>                    <div class="reportlet">
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p>                    <div class="reportlet">
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<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p>                    <div class="reportlet">
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    <h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
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<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p>                    <div class="reportlet">
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    <h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
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<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p>                    <div class="reportlet">
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<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p>                    <div class="reportlet">
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-0051/ses-01/func/sub-0051_ses-01_task-alignvideo_acq-mb8_run-01_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+gd5b13cb5.d20240826</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>e3a1f1c9ceef37a8ef6726d104e9daa1</td></tr>
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<tr><td colspan=2>AcquisitionMatrixPE</td><td>82</td></tr>
<tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
<tr><td colspan=2>AcquisitionTime</td><td>11:22:48.987500</td></tr>
<tr><td colspan=2>BandwidthPerPixelPhaseEncode</td><td>24.888</td></tr>
<tr><td colspan=2>BaseResolution</td><td>82</td></tr>
<tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
<tr><td colspan=2>ConsistencyInfo</td><td>N4_VE11E_LATEST_20181129</td></tr>
<tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
<tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20201102</td></tr>
<tr><td colspan=2>DerivedVendorReportedEchoSpacing</td><td>0.00049</td></tr>
<tr><td colspan=2>DeviceSerialNumber</td><td>66112</td></tr>
<tr><td colspan=2>DwellTime</td><td>2e-06</td></tr>
<tr><td colspan=2>EchoTime</td><td>0.0272</td></tr>
<tr><td colspan=2>EchoTrainLength</td><td>82</td></tr>
<tr><td colspan=2>EffectiveEchoSpacing</td><td>0.00049</td></tr>
<tr><td colspan=2>FlipAngle</td><td>44</td></tr>
<tr><td colspan=2>ImageComments</td><td>Unaliased MB8/PE3</td></tr>
<tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[0.998641, -0.0142818, -0.0501271, 0.0264992, 0.967278, 0.252332]</td></tr>
<tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']</td></tr>
<tr><td colspan=2>ImagingFrequency</td><td>123.252</td></tr>
<tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td colspan=2>InstitutionAddress</td><td>Maynard 3,Hanover,NH,US,03755</td></tr>
<tr><td colspan=2>InstitutionName</td><td>Dartmouth College - PBS</td></tr>
<tr><td colspan=2>InstitutionalDepartmentName</td><td>Department</td></tr>
<tr><td colspan=2>MRAcquisitionType</td><td>2D</td></tr>
<tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
<tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
<tr><td colspan=2>ManufacturersModelName</td><td>Prisma</td></tr>
<tr><td colspan=2>Modality</td><td>MR</td></tr>
<tr><td colspan=2>MultibandAccelerationFactor</td><td>8</td></tr>
<tr><td colspan=2>PartialFourier</td><td>1</td></tr>
<tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
<tr><td colspan=2>PercentPhaseFOV</td><td>100</td></tr>
<tr><td colspan=2>PercentSampling</td><td>100</td></tr>
<tr><td colspan=2>PhaseEncodingDirection</td><td>j-</td></tr>
<tr><td colspan=2>PhaseEncodingSteps</td><td>82</td></tr>
<tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
<tr><td colspan=2>PixelBandwidth</td><td>3050</td></tr>
<tr><td colspan=2>ProcedureStepDescription</td><td>Wager_Wager^1076_spacetop</td></tr>
<tr><td colspan=2>ProtocolName</td><td>func_run-01_task-alignvideo_acq-ap-mb8</td></tr>
<tr><td colspan=2>PulseSequenceDetails</td><td>%CustomerSeq%\cmrr_mbep2d_bold</td></tr>
<tr><td colspan=2>ReceiveCoilActiveElements</td><td>HEA;HEP</td></tr>
<tr><td colspan=2>ReceiveCoilName</td><td>Head_32</td></tr>
<tr><td colspan=2>ReconMatrixPE</td><td>82</td></tr>
<tr><td colspan=2>RepetitionTime</td><td>0.46</td></tr>
<tr><td colspan=2>SAR</td><td>0.0968447</td></tr>
<tr><td colspan=2>ScanOptions</td><td>FS</td></tr>
<tr><td colspan=2>ScanningSequence</td><td>EP</td></tr>
<tr><td colspan=2>SequenceName</td><td>epfid2d1_82</td></tr>
<tr><td colspan=2>SequenceVariant</td><td>SK\SS</td></tr>
<tr><td colspan=2>SeriesDescription</td><td>func_run-01_task-alignvideo_acq-ap-mb8</td></tr>
<tr><td colspan=2>SeriesNumber</td><td>30</td></tr>
<tr><td colspan=2>ShimSetting</td><td>[4124, -7785, -7293, 577, -45, -78, -20, 135]</td></tr>
<tr><td colspan=2>SliceThickness</td><td>2.7</td></tr>
<tr><td colspan=2>SliceTiming</td><td>[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875]</td></tr>
<tr><td colspan=2>SoftwareVersions</td><td>syngo MR E11</td></tr>
<tr><td colspan=2>SpacingBetweenSlices</td><td>2.7</td></tr>
<tr><td colspan=2>StationName</td><td>AWP66112</td></tr>
<tr><td colspan=2>TaskName</td><td>alignvideo</td></tr>
<tr><td colspan=2>TotalReadoutTime</td><td>0.03969</td></tr>
<tr><td colspan=2>TxRefAmp</td><td>251.747</td></tr>
<tr><td colspan=2>WipMemBlock</td><td>7960b3af-f3bb-428b-bc0f-6f6882f253d8||Sequence: R016 ve11e/master r/434b28f1; Aug  7 2019 18:53:46 by eja</td></tr>
<tr><td>dcmmeta</td><td>affine</td><td>[[-2.6792800426483154, 0.07109539955854416, -0.12118430435657501, 115.28022003173828], [0.03831706568598747, 2.595135450363159, 0.6839578747749329, -107.16219329833984], [-0.13448737561702728, -0.6769893765449524, 2.609121799468994, -40.172489166259766], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
<tr><td>dcmmeta</td><td>shape</td><td>[82, 82, 56, 1073]</td></tr>
<tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
<tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
<tr><td colspan=2>time</td><td>{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 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</table>

      </div>
    </div>
  </div>


  <div class="accordion-item">
    <h2 class="accordion-header" id="about-metadata-2">
      <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
        Extracted Image quality metrics (IQMs)
      </button>
    </h2>
    <div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
      <div class="accordion-body metadata-table">
      <table id="about-metadata-table-2" class="table table-sm table-striped">
<tr><td colspan=3>aor</td><td>0.0037236999068033546</td></tr>
<tr><td colspan=3>aqi</td><td>0.04614291658900279</td></tr>
<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>44.08217135493479</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.2699351759141793</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>1.008051929356343</td></tr>
<tr><td colspan=3>efc</td><td>0.5095</td></tr>
<tr><td colspan=3>fber</td><td>4038.6287</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.16713442610867277</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>218</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>20.31686859273066</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>2.3744911252145555</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>2.251895128128818</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>2.6885190268098023</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>2.1830592207050463</td></tr>
<tr><td colspan=3>gcor</td><td>0.0132758</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>-0.012607814744114876</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.041239842772483826</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>1073</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>82</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>82</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>56</td></tr>
<tr><td colspan=3>snr</td><td>4.196463288057277</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>0.46000000834465027</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.682926893234253</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.682926893234253</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.700000047683716</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>17.7363</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>63.2655</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>231.5377</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>62.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>293028.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>15.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>1083.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>401.3307</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>3.3878</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>528.1935</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>3727.6878</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>3909.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>83516.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>1439.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>4775.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>931.4931</td></tr>
<tr><td colspan=3>tsnr</td><td>31.065419794991612</td></tr>
</table>

      </div>
    </div>
  </div>

</div>
        </div>
    </div>

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      <div class="accordion-body">
        <fieldset id="qcartifacts-group" class="form-group">
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                <input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
                <label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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            <div class="form-check form-switch small">
                <input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
                <label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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                <input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
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                <input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
                <label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
            </div>
            <div class="form-check form-switch small">
                <input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
                <label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
            </div>
            <div class="form-check form-switch small">
                <input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
                <label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
            </div>
            <div class="form-check form-switch small">
                <input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
                <label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
            </div>
            <div class="form-check form-switch small">
                <input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
                <label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
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            <div class="form-check form-switch small">
                <input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
                <label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
            </div>
            <div class="form-check form-switch small">
                <input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
                <label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
            </div>
            <div class="form-check form-switch small">
                <input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
                <label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
            </div>
        </fieldset>
      </div> <!-- accordion-body -->
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  </div> <!-- accordion-item -->
  <div class="accordion-item">
    <h2 class="accordion-header" id="qcextra-head">
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    <div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
      <div class="accordion-body">
        <div class="input-group">
          <span class="input-group-text">Comments</span>
          <textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
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        <p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
        <input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
        <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
            <li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
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        </ul>
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</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
<button class="btn btn-primary" id="btn-post" value="8sSYVI0XjFqacEMZ8wF4" disabled>Share publicly</button>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {

    if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
        $('#btn-download').removeClass('disabled');
        $('#btn-download').removeAttr('aria-disabled');
        $('#btn-post').removeAttr('disabled');
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        return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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    } else {
        $('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
    };

    var payload = read_form();
});

$('#qcextra-confidence').on('input', function() {
    if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
        $('#btn-download').removeClass('disabled');
        $('#btn-download').removeAttr('aria-disabled');
        $('#btn-post').removeAttr('disabled');
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        return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
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});


$('#qcextra-comments').bind('input propertychange', function() {
    if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
        $('#btn-download').removeClass('disabled');
        $('#btn-download').removeAttr('aria-disabled');
        $('#btn-post').removeAttr('disabled');
    };
});

$( '#btn-post' ).click( function() {
    var payload = read_form();
    var md5sum = "unspecified";
    var params = {
        'rating': payload['rating'],
        'md5sum': md5sum,
        'name': "",
        'comment': JSON.stringify(payload['artifacts'])
    };

    // disable development releases
    var authorization = $(this).val();
    var ratingReq = new XMLHttpRequest();
    ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
    ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
    ratingReq.setRequestHeader("Authorization", authorization);
    ratingReq.onload = function () {
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        $('#btn-post').attr('disabled', true);
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        $('#btn-post').removeClass('active');
        if (status === "201") {
            $('#btn-post').addClass('btn-success');
            $('#btn-post').html('Posted!');
        } else {
            $('#btn-post').addClass('btn-danger');
            $('#btn-post').html('Failed');
        };
    };
    ratingReq.send(JSON.stringify(params));
});

$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
    if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
        $('#btn-download').removeClass('disabled');
        $('#btn-download').removeAttr('aria-disabled');
        $('#btn-post').removeAttr('disabled');
    };
    
    var payload = read_form();
});

$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
    toggle_rating();
});
</script>
</div>

<script type="text/javascript">
function toggle(id) {
    var element = document.getElementById(id);
    if(element.style.display == 'block')
        element.style.display = 'none';
    else
        element.style.display = 'block';
}
</script>
</body>
</html><script>{let postHeight = () => {window.parent.postMessage({frameHeight: document.documentElement.offsetHeight || document.documentElement.scrollHeight}, '*')}; window.addEventListener('load', postHeight); window.addEventListener('message', (event) => {if (event.source === window.parent && event.data.requestOffsetHeight) postHeight()});}</script>