Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0043/figures/sub-0043_ses-02_task-faces_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0043/figures/sub-0043_ses-02_task-faces_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0043/figures/sub-0043_ses-02_task-faces_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0043/figures/sub-0043_ses-02_task-faces_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0043/figures/sub-0043_ses-02_task-faces_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0043/figures/sub-0043_ses-02_task-faces_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0043/figures/sub-0043_ses-02_task-faces_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0043/figures/sub-0043_ses-02_task-faces_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0043/ses-02/func/sub-0043_ses-02_task-faces_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum4e4adc386e5f4d7139652ce951835d61

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime11:33:48.097500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.997907, 0.0566818, 0.0311379, -0.0570147, 0.998324, 0.00991151]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-faces_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0837683
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-faces_acq-ap-mb8
SeriesNumber16
ShimSetting[4141, -7775, -7292, 597, -79, -340, 13, 86]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.375, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamefaces
TotalReadoutTime0.03969
TxRefAmp233.113
WipMemBlockb80640ba-3ee7-45f6-87f9-fb092bfd7ec4||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.6773104667663574, -0.15296639502048492, 0.0824146643280983, 115.42499542236328], [-0.15207302570343018, 2.6784305572509766, 0.031498417258262634, -96.7724838256836], [0.08354080468416214, -0.02659185230731964, 2.6985580921173096, -81.25922393798828], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 914]
dcmmetaslice_dim2
dcmmetaversion0.6
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'slices': {}}

aor0.001251859956236324
aqi0.02444469496717724
dummy_trs0
dvarsnstd37.513977067458924
dvarsstd1.2187751622124856
dvarsvstd0.995413760952902
efc0.4833
fber5055.2539
fdmean0.07979428339425813
fdnum22
fdperc2.4070021881838075
fwhmavg2.6755371973868507
fwhmx2.703286481003173
fwhmy2.758602934229781
fwhmz2.564722176927599
gcor0.00922499
gsrx0.00180579733569175
gsry0.012086364440619946
sizet914
sizex82
sizey82
sizez56
snr3.9132975799064216
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk20.9048
summarybgmad49.3217
summarybgmean201.4005
summarybgmedian55.0
summarybgn298661.0
summarybgp0516.0
summarybgp95928.0
summarybgstdv384.0203
summaryfgk2.5706
summaryfgmad566.7319
summaryfgmean3700.5927
summaryfgmedian3912.0
summaryfgn77883.0
summaryfgp051248.0
summaryfgp954834.0
summaryfgstdv999.662
tsnr39.294235579669476
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