Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0039/figures/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0039/figures/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0039/figures/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0039/figures/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0039/figures/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0039/figures/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0039/figures/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0039/figures/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0039/ses-02/func/sub-0039_ses-02_task-alignvideo_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum5bcd2abd6a50c58fab3b6aaf7c9faaf4

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime20:17:40.525000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.998444, 0.0392077, 0.0396552, -0.0451644, 0.985654, 0.162626]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-alignvideo_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.100316
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-alignvideo_acq-ap-mb8
SeriesNumber28
ShimSetting[4150, -7759, -7242, 666, -42, -195, 5, 74]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamealignvideo
TotalReadoutTime0.03969
TxRefAmp238.862
WipMemBlock3f4ac90c-abbe-4e78-b2e6-4e228e3d89eb||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.6787519454956055, -0.12117280811071396, 0.08831733465194702, 115.96089172363281], [-0.10519128292798996, 2.6444365978240967, 0.44324198365211487, -105.52169799804688], [0.1063920184969902, -0.4363130033016205, 2.661904811859131, -47.50556182861328], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 839]
dcmmetaslice_dim2
dcmmetaversion0.6
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9408.0, 9388.0, 9390.0]}, 'slices': {}}

aor0.002326922155688623
aqi0.018117867065868265
dummy_trs4
dvarsnstd35.19553026954441
dvarsstd1.228489180551559
dvarsvstd1.0428596895083937
efc0.4642
fber6867.2598
fdmean0.0866403395109096
fdnum29
fdperc3.4730538922155687
fwhmavg2.394652692688679
fwhmx2.3447079440978063
fwhmy2.630187210018723
fwhmz2.209062923949508
gcor0.0143845
gsrx-0.015110054053366184
gsry0.02283175103366375
sizet835
sizex82
sizey82
sizez56
snr3.933145407697255
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk36.2525
summarybgmad36.266
summarybgmean168.8922
summarybgmedian44.0
summarybgn303143.0
summarybgp0515.0
summarybgp95796.0
summarybgstdv350.5009
summaryfgk2.4842
summaryfgmad498.5272
summaryfgmean3450.3147
summaryfgmedian3658.0
summaryfgn73401.0
summaryfgp051163.0
summaryfgp954509.0
summaryfgstdv930.0381
tsnr44.60689710639417
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