Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0037/figures/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0037/figures/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0037/figures/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0037/figures/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0037/figures/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0037/figures/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0037/figures/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0037/figures/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0037/ses-02/func/sub-0037_ses-02_task-alignvideo_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumc934e135d7a36e4ef4893f839d8471f0

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime18:31:14.107500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999482, 0.018891, 0.0260592, -0.018842, 0.99982, -0.00212298]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-alignvideo_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0903184
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-alignvideo_acq-ap-mb8
SeriesNumber28
ShimSetting[4155, -7735, -7275, 578, -28, -215, 41, 69]
SliceThickness2.7
SliceTiming[0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875, 0, 0.25, 0.0625, 0.3125, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamealignvideo
TotalReadoutTime0.03969
TxRefAmp258.65
WipMemBlock5acd37b1-570c-4eb1-8bd2-eaa7fa950772||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.681536912918091, -0.05055182799696922, 0.07045552134513855, 111.5897216796875], [-0.05068317800760269, 2.6824445724487305, -0.004403355065733194, -93.03976440429688], [0.06991497427225113, 0.005695803090929985, 2.6990768909454346, -82.97439575195312], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 839]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00023454545454545454
aqi0.017843066267942586
dummy_trs3
dvarsnstd40.27085486768862
dvarsstd1.2061501649341326
dvarsvstd0.9969336585868268
efc0.4961
fber3999.9534
fdmean0.07542804274933702
fdnum5
fdperc0.5980861244019139
fwhmavg2.399911480390577
fwhmx2.3682493980819888
fwhmy2.64742211869872
fwhmz2.1840629243910237
gcor0.00512783
gsrx-0.01367937307804823
gsry0.03100697509944439
sizet836
sizex82
sizey82
sizez56
snr3.8706879428184093
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk23.1503
summarybgmad47.101
summarybgmean196.5376
summarybgmedian51.0
summarybgn299596.0
summarybgp0516.0
summarybgp95939.0
summarybgstdv358.5102
summaryfgk2.4166
summaryfgmad454.9319
summaryfgmean3022.469
summaryfgmedian3195.0
summaryfgn76948.0
summaryfgp051007.0
summaryfgp953969.0
summaryfgstdv825.4293
tsnr43.04451287625125
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