Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0035/figures/sub-0035_ses-03_task-social_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0035/figures/sub-0035_ses-03_task-social_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0035/figures/sub-0035_ses-03_task-social_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0035/figures/sub-0035_ses-03_task-social_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0035/figures/sub-0035_ses-03_task-social_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0035/figures/sub-0035_ses-03_task-social_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0035/figures/sub-0035_ses-03_task-social_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0035/figures/sub-0035_ses-03_task-social_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0035/ses-03/func/sub-0035_ses-03_task-social_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum3fd54dbcb35716b2fe6348e27d92851b

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime17:30:2.740000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.996565, 0.00711865, 0.0825096, -0.0163512, 0.9936, 0.111768]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.104864
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-social_acq-ap-mb8
SeriesNumber8
ShimSetting[4159, -7735, -7206, 627, -14, -59, 96, 48]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp258.164
WipMemBlock8f3accfa-25d3-4424-b4b2-70980ce6b5d8||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.673710584640503, -0.04386912286281586, 0.2192019373178482, 109.48077392578125], [-0.01909881830215454, 2.6657555103302, 0.3043804168701172, -104.3335189819336], [0.22136728465557098, -0.2998661696910858, 2.6738181114196777, -51.4133186340332], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.000969516129032258
aqi0.031751952880184335
dummy_trs4
dvarsnstd44.017575137474104
dvarsstd1.3224737536101492
dvarsvstd0.9871732371856969
efc0.4992
fber4924.5625
fdmean0.1068744096616376
fdnum49
fdperc5.645161290322581
fwhmavg2.432269799773444
fwhmx2.3304175808021514
fwhmy2.6420511188267746
fwhmz2.324340699691407
gcor0.009853
gsrx-0.02101973071694374
gsry0.04893042519688606
sizet868
sizex82
sizey82
sizez56
snr4.134570780272373
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk18.708
summarybgmad47.2212
summarybgmean202.0443
summarybgmedian50.0
summarybgn295487.0
summarybgp0514.0
summarybgp95974.0
summarybgstdv382.0591
summaryfgk2.8218
summaryfgmad538.856
summaryfgmean3365.4625
summaryfgmedian3501.0
summaryfgn81057.0
summaryfgp051377.0
summaryfgp954408.0
summaryfgstdv846.7574
tsnr34.317185991443694
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