Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0034/figures/sub-0034_ses-04_task-social_acq-mb8_run-02_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0034/figures/sub-0034_ses-04_task-social_acq-mb8_run-02_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0034/figures/sub-0034_ses-04_task-social_acq-mb8_run-02_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0034/figures/sub-0034_ses-04_task-social_acq-mb8_run-02_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0034/figures/sub-0034_ses-04_task-social_acq-mb8_run-02_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0034/figures/sub-0034_ses-04_task-social_acq-mb8_run-02_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0034/figures/sub-0034_ses-04_task-social_acq-mb8_run-02_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0034/figures/sub-0034_ses-04_task-social_acq-mb8_run-02_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0034/ses-04/func/sub-0034_ses-04_task-social_acq-mb8_run-02_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumd10bb25c7a31411bf8b71879b6188c18

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime09:06:9.027500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11E_LATEST_20181129
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.998007, 0.0631031, 0.001013, -0.0626144, 0.988013, 0.141103]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-02_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0884947
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-02_task-social_acq-ap-mb8
SeriesNumber16
ShimSetting[4168, -7857, -7356, 453, 90, -325, -186, 61]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp253.993
WipMemBlock6d804f98-ded6-45f2-a0b4-89e95591921f||Sequence: R016 ve11e/master r/434b28f1; Aug 7 2019 18:53:46 by eja
dcmmetaaffine[[-2.6775784492492676, -0.16798987984657288, -0.021338554099202156, 120.30944061279297], [-0.16930092871189117, 2.650766372680664, 0.38038939237594604, -86.44331359863281], [0.0027177943848073483, -0.37856853008270264, 2.672985076904297, -63.95380401611328], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.003654551724137931
aqi0.06253722425287357
dummy_trs2
dvarsnstd38.575278467767504
dvarsstd1.0987819100000003
dvarsvstd0.9829068257997706
efc0.4724
fber4653.3984
fdmean0.167849618294103
fdnum246
fdperc28.275862068965516
fwhmavg2.3494304480847026
fwhmx2.213489310862666
fwhmy2.5727946659325225
fwhmz2.26200736745892
gcor0.00658719
gsrx-0.020243672654032707
gsry0.02670874074101448
sizet870
sizex82
sizey82
sizez56
snr4.431198324597945
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk42.7595
summarybgmad46.2913
summarybgmean151.291
summarybgmedian49.0
summarybgn301894.0
summarybgp0514.0
summarybgp95620.0
summarybgstdv271.7511
summaryfgk3.2714
summaryfgmad449.5872
summaryfgmean3204.4237
summaryfgmedian3340.0
summaryfgn74650.0
summaryfgp051416.0
summaryfgp954086.0
summaryfgstdv753.7414
tsnr28.352038014912978
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