Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0031/figures/sub-0031_ses-02_task-faces_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0031/figures/sub-0031_ses-02_task-faces_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0031/figures/sub-0031_ses-02_task-faces_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0031/figures/sub-0031_ses-02_task-faces_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0031/figures/sub-0031_ses-02_task-faces_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0031/figures/sub-0031_ses-02_task-faces_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0031/figures/sub-0031_ses-02_task-faces_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0031/figures/sub-0031_ses-02_task-faces_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0031/ses-02/func/sub-0031_ses-02_task-faces_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum8c66c912dfd39f186960e09761152565

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime12:04:18.020000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999768, -0.0212369, -0.00355872, 0.0212913, 0.999645, 0.0160159]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-faces_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.134129
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-faces_acq-ap-mb8
SeriesNumber16
ShimSetting[4152, -7748, -7190, 499, -43, -163, 127, 41]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.1875]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamefaces
TotalReadoutTime0.03969
TxRefAmp302.406
WipMemBlock69534332-533f-47e7-94e8-ff07d7261518||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.682304859161377, 0.05712303891777992, -0.008686798624694347, 111.3343505859375], [0.056977104395627975, 2.681974411010742, 0.043437402695417404, -90.51675415039062], [-0.009547796100378036, -0.04296940937638283, 2.699636697769165, -36.8962516784668], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 914]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0003456970362239298
aqi0.013783423710208562
dummy_trs3
dvarsnstd43.42675187686814
dvarsstd1.3433311417582403
dvarsvstd1.0039640898131879
efc0.5198
fber4077.0156
fdmean0.06589411880219134
fdnum4
fdperc0.43907793633369924
fwhmavg2.3678684599782933
fwhmx2.251906309946733
fwhmy2.5957546653851136
fwhmz2.255944404603033
gcor0.00504838
gsrx-0.015081552788615227
gsry0.034021470695734024
sizet911
sizex82
sizey82
sizez56
snr4.123456211799074
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk14.0623
summarybgmad69.0183
summarybgmean274.6356
summarybgmedian69.0
summarybgn288686.0
summarybgp0516.0
summarybgp951357.0
summarybgstdv490.7976
summaryfgk3.0618
summaryfgmad690.4661
summaryfgmean4235.4033
summaryfgmedian4382.0
summaryfgn87858.0
summaryfgp051763.0
summaryfgp955575.0
summaryfgstdv1062.6947
tsnr48.379723493009806
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