Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0018/figures/sub-0018_ses-01_task-social_acq-mb8_run-01_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0018/figures/sub-0018_ses-01_task-social_acq-mb8_run-01_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0018/figures/sub-0018_ses-01_task-social_acq-mb8_run-01_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0018/figures/sub-0018_ses-01_task-social_acq-mb8_run-01_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0018/figures/sub-0018_ses-01_task-social_acq-mb8_run-01_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0018/figures/sub-0018_ses-01_task-social_acq-mb8_run-01_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0018/figures/sub-0018_ses-01_task-social_acq-mb8_run-01_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0018/figures/sub-0018_ses-01_task-social_acq-mb8_run-01_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0018/ses-01/func/sub-0018_ses-01_task-social_acq-mb8_run-01_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum5339069b6f4a2aa1cc2f4bf331891f57

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime10:06:50.717500
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.997501, -0.0594939, 0.0380973, 0.0568169, 0.996075, 0.0678658]
ImageType['ORIGINAL', 'PRIMARY', 'FMRI', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-01_task-social_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.100017
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-01_task-social_acq-ap-mb8
SeriesNumber11
ShimSetting[4156, -7740, -7276, 673, -65, -229, -20, 12]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamesocial
TotalReadoutTime0.03969
TxRefAmp232.71
WipMemBlock292f54d1-fdb4-462e-8087-defbd27b521b||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.6762232780456543, 0.1524355560541153, 0.11336053162813187, 103.03473663330078], [0.1596178561449051, 2.6723973751068115, 0.17693547904491425, -103.24422454833984], [0.10221226513385773, -0.18207897245883942, 2.691810369491577, -60.427490234375], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 872]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.0005815074798619102
aqi0.022269474913693903
dummy_trs3
dvarsnstd36.67009782571426
dvarsstd1.2095511552649763
dvarsvstd0.9960690122811069
efc0.464
fber10252.1885
fdmean0.11425395238725163
fdnum64
fdperc7.3647871116225545
fwhmavg2.334860685198642
fwhmx2.2490847645594587
fwhmy2.515815849109185
fwhmz2.2396814419272837
gcor0.052139
gsrx-0.007091282866895199
gsry0.026577454060316086
sizet869
sizex82
sizey82
sizez56
snr4.079383008564646
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk21.8037
summarybgmad1.8324
summarybgmean11.0063
summarybgmedian2.0
summarybgn301807.0
summarybgp050.0
summarybgp9557.0
summarybgstdv23.5878
summaryfgk2.6485
summaryfgmad38.3208
summaryfgmean234.7866
summaryfgmedian245.0
summaryfgn74737.0
summaryfgp0593.0
summaryfgp95308.0
summaryfgstdv60.0577
tsnr38.53361478401348
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