Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0014/figures/sub-0014_ses-02_task-faces_acq-mb8_run-03_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0014/figures/sub-0014_ses-02_task-faces_acq-mb8_run-03_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0014/figures/sub-0014_ses-02_task-faces_acq-mb8_run-03_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0014/figures/sub-0014_ses-02_task-faces_acq-mb8_run-03_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0014/figures/sub-0014_ses-02_task-faces_acq-mb8_run-03_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0014/figures/sub-0014_ses-02_task-faces_acq-mb8_run-03_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0014/figures/sub-0014_ses-02_task-faces_acq-mb8_run-03_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0014/figures/sub-0014_ses-02_task-faces_acq-mb8_run-03_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0014/ses-02/func/sub-0014_ses-02_task-faces_acq-mb8_run-03_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum0aa2c5ad8d7747c8188f7d9e33360076

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime16:05:48.225000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.998954, 0.00268722, 0.0456377, -0.0104614, 0.98522, 0.170977]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-03_task-faces_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0954469
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-03_task-faces_acq-ap-mb8
SeriesNumber20
ShimSetting[4157, -7747, -7256, 476, -80, -26, 54, 51]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19, 0, 0.2525, 0.0625, 0.315, 0.125, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamefaces
TotalReadoutTime0.03969
TxRefAmp251.355
WipMemBlock69c960c8-73a3-42ff-a0e1-49af6f149e4f||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.680121660232544, -0.028067218139767647, 0.12015999108552933, 109.26372528076172], [-0.007209617178887129, 2.6432721614837646, 0.46244311332702637, -105.91155242919922], [0.12244260311126709, -0.45871761441230774, 2.6573874950408936, -49.01698303222656], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 914]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.00024020879120879122
aqi0.01592715186813187
dummy_trs4
dvarsnstd39.44561403298131
dvarsstd1.1965205445324523
dvarsvstd1.000794541859185
efc0.5079
fber3394.7061
fdmean0.07467345166922507
fdnum3
fdperc0.32967032967032966
fwhmavg2.6045226027982644
fwhmx2.533408575962469
fwhmy2.871770386077113
fwhmz2.408388846355211
gcor0.0117883
gsrx-0.007842154242098331
gsry0.03634575381875038
sizet910
sizex82
sizey82
sizez56
snr3.613456034672781
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.700000047683716
summarybgk14.1659
summarybgmad59.2275
summarybgmean232.8415
summarybgmedian59.0
summarybgn296779.0
summarybgp0515.0
summarybgp951169.0
summarybgstdv413.5363
summaryfgk1.8693
summaryfgmad551.2866
summaryfgmean3226.662
summaryfgmedian3437.0
summaryfgn79765.0
summaryfgp05899.0
summaryfgp954327.0
summaryfgstdv951.161
tsnr40.84692360274494
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