Basic echo-wise reports

Standard deviation of signal through time

The voxel-wise standard deviation of the signal (variability along time).

Get figure file: sub-0011/figures/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_desc-stdev_bold.svg

View of the background of the voxel-wise average of the BOLD timeseries

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-0011/figures/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_desc-background_bold.svg

Voxel-wise average of BOLD time-series, zoomed-in covering just the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-0011/figures/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_desc-zoomed_bold.svg

Carpetplot and nuisance signals

The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.

Get figure file: sub-0011/figures/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_desc-carpet_bold.svg

Extended echo-wise reports

Voxel-wise average of BOLD time-series

The average signal calculated across the last axis (time).

Get figure file: sub-0011/figures/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_desc-mean_bold.svg

Extended reports shared across echos

Brain extraction performance

Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.

Get figure file: sub-0011/figures/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_desc-brainmask_bold.svg

Spatial normalization of the anatomical image

This panel shows a quick-and-dirty nonlinear registration into the MNI152NLin2009cAsym template accessed with TemplateFlow.

Problem loading figure sub-0011/figures/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-0011/figures/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_desc-norm_bold.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-0011/ses-02/func/sub-0011_ses-02_task-alignvideo_acq-mb8_run-04_bold.nii.gz
VersionsMRIQC24.1.0.dev0+gd5b13cb5.d20240826
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sumf5cdc1a9d133a15f35e586f3a6d2e969

AcquisitionMatrixPE82
AcquisitionNumber1
AcquisitionTime17:10:28.110000
BandwidthPerPixelPhaseEncode24.888
BaseResolution82
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20201102
DerivedVendorReportedEchoSpacing0.00049
DeviceSerialNumber66112
DwellTime2e-06
EchoTime0.0272
EchoTrainLength82
EffectiveEchoSpacing0.00049
FlipAngle44
ImageCommentsUnaliased MB8/PE3
ImageOrientationPatientDICOM[0.999793, 0.0148028, 0.0139919, -0.0165787, 0.990465, 0.13676]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC']
ImagingFrequency123.252
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressMaynard 3,Hanover,NH,US,03755
InstitutionNameDartmouth College - PBS
InstitutionalDepartmentNameDepartment
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
MultibandAccelerationFactor8
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj-
PhaseEncodingSteps82
PhaseResolution1
PixelBandwidth3050
ProcedureStepDescriptionWager_Wager^1076_spacetop
ProtocolNamefunc_run-04_task-alignvideo_acq-ap-mb8
PulseSequenceDetails%CustomerSeq%\cmrr_mbep2d_bold
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE82
RepetitionTime0.46
SAR0.0777757
ScanOptionsFS
ScanningSequenceEP
SequenceNameepfid2d1_82
SequenceVariantSK\SS
SeriesDescriptionfunc_run-04_task-alignvideo_acq-ap-mb8
SeriesNumber36
ShimSetting[4149, -7732, -7313, 492, -67, -189, -31, 64]
SliceThickness2.7
SliceTiming[0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19, 0, 0.2525, 0.065, 0.315, 0.1275, 0.3775, 0.19]
SoftwareVersionssyngo MR E11
SpacingBetweenSlices2.7
StationNameAWP66112
TaskNamealignvideo
TotalReadoutTime0.03969
TxRefAmp221.713
WipMemBlock09bf99ba-6d44-41ed-9f47-83f626939d3e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja
dcmmetaaffine[[-2.682370185852051, -0.04447935149073601, 0.031951989978551865, 112.64012908935547], [-0.03971490636467934, 2.657346487045288, 0.3698021471500397, -108.6791000366211], [0.0375392846763134, -0.36691755056381226, 2.6743643283843994, -65.99459838867188], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 81.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[82, 82, 56, 914]
dcmmetaslice_dim2
dcmmetaversion0.6
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aor0.004126115973741794
aqi0.04279071323851203
dummy_trs0
dvarsnstd36.13450625475357
dvarsstd1.2281787431653879
dvarsvstd1.006460356319824
efc0.4357
fber8263.5449
fdmean0.07374753401431995
fdnum27
fdperc2.9540481400437635
fwhmavg2.441492518613383
fwhmx2.2918663999031015
fwhmy2.6468332096218514
fwhmz2.3857779463151965
gcor0.0111902
gsrx-0.01693946309387684
gsry0.026033392176032066
sizet914
sizex82
sizey82
sizez56
snr3.9339958833610775
spacingtr0.46000000834465027
spacingx2.682926893234253
spacingy2.682926893234253
spacingz2.6999998092651367
summarybgk30.2203
summarybgmad30.0089
summarybgmean136.9642
summarybgmedian39.0
summarybgn311140.0
summarybgp0514.0
summarybgp95618.0
summarybgstdv280.3171
summaryfgk2.3178
summaryfgmad506.1472
summaryfgmean3305.0377
summaryfgmedian3506.0
summaryfgn65404.0
summaryfgp051142.0
summaryfgp954295.0
summaryfgstdv891.199
tsnr33.749037228990346
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